View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_30 (Length: 324)
Name: NF19787_high_30
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 38705882 - 38705563
Alignment:
| Q |
1 |
ttaaggatatatggatttt-ttagaaatggggtttaagttaattgattgtattattattatt---gactnnnnnnnn-tatagtttaattgttcatgagt |
95 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| |
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| T |
38705882 |
ttaaggatatatggattttattagaaatggggtttaagttaattgattgtattattattattattgactaaaaaaagctatagtttaattgttcacgagt |
38705783 |
T |
|
| Q |
96 |
cttagctcaatccgattaaaatgttaaaattattagaccaaacttaagatcaaagtttcttgnnnnnnnnnnc-----ttaggatcaaagtttatatttc |
190 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||| |
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| T |
38705782 |
cttagctcagtccgattaaaatgttaaaattattagatcaaacttaggatcaaaatttcttgaaagaaaacaaaaaatttaggatcaaagtttatatttc |
38705683 |
T |
|
| Q |
191 |
acttatatgttggagtttataacaactttattattttgtctatctnnnnnnntggtttaattgattgctgtacacatggatcgaatcatgtattatcgta |
290 |
Q |
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|||| ||||| | || ||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||| ||||||||||||||||| |
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| T |
38705682 |
acttctatgt-gaagcttataacaactttattattttgtctatctaaaaaaatggtttaattaattattgtacacatagatcaaatcatgtattatcgta |
38705584 |
T |
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| Q |
291 |
tcaacttatgaagagattgat |
311 |
Q |
| |
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||||||||||||||||||||| |
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| T |
38705583 |
tcaacttatgaagagattgat |
38705563 |
T |
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