View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_31 (Length: 322)
Name: NF19787_high_31
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 43536486 - 43536799
Alignment:
| Q |
1 |
atttattaaatatgttggtgatgaataaaatctcataggaatgactcataatctagtgtctagacttgataaaaagagagtgtagtgtctagaaagactg |
100 |
Q |
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| T |
43536486 |
atttattaaatatgttggtgatgaataaaatctcataggaatgactcataatctagtgtctagacttgataaaaaaagagtgtagtgtctagaaagaccg |
43536585 |
T |
|
| Q |
101 |
gtcacatttatataaaaccaaatgattgaaacgtagcatcatggaaaatacaataaacctagacaagggtgaatagaaatacaatatcatgtaaagagcc |
200 |
Q |
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| T |
43536586 |
gtcacatttatataaaaccaaatgattgaaacgtagcatcatggaaaatacaataaacctagacaagggtgaatagaaatacaatatcatgtaaagagcc |
43536685 |
T |
|
| Q |
201 |
tggtaaaaggagagtaacaatgaatttacaaaatcgatagtgaaaagaatttcttgg---nnnnnnnnnttgatgcaagggagagaaaacaaagagaggg |
297 |
Q |
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| T |
43536686 |
tggtaaaaggagagtaacaatgaatttacaaaatcaatagtgaaaagaatttcttggaaaaaaaaaaaattgatgcaagggagagaaaacaaagagaggg |
43536785 |
T |
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| Q |
298 |
ccacagaagtgatg |
311 |
Q |
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| T |
43536786 |
ccacagaagtgatg |
43536799 |
T |
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