View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19787_high_32 (Length: 321)
Name: NF19787_high_32
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_32 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0771 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 110 - 321
Target Start/End: Complemental strand, 54619120 - 54618912
Alignment:
| Q |
110 |
aggggaggtaagctattgtagtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54619120 |
aggggaggtaagctattgcagtgaagctccctctgcccctgcccttgtgtttggtcaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
54619021 |
T |
|
| Q |
210 |
ggtgcgagggctatcgctttcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
309 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54619020 |
ggtgcgaggg---tcgctgtcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
54618924 |
T |
|
| Q |
310 |
ggtttgcgtaaa |
321 |
Q |
| |
|
|||||||||||| |
|
|
| T |
54618923 |
ggtttgcgtaaa |
54618912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 54619629 - 54619520
Alignment:
| Q |
8 |
gggtggactaatgcagatgaaataagttgaatcatacaacaaactatattcaagtgattatgtttgagtatcactcataggcacaaaagaggggcaaggg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54619629 |
gggtggactaatgcagatgaaataagttgaatcatacaacagactatattcaagtgattatgtttgagtatcactcataggcacaaaagaggggcaaggg |
54619530 |
T |
|
| Q |
108 |
gcaggggagg |
117 |
Q |
| |
|
|||||||||| |
|
|
| T |
54619529 |
gcaggggagg |
54619520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 13951061 - 13951107
Alignment:
| Q |
134 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
180 |
Q |
| |
|
|||||||||||||||| |||||| ||||| || |||||||||||||| |
|
|
| T |
13951061 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
13951107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 3201 - 3247
Alignment:
| Q |
134 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
180 |
Q |
| |
|
|||||||||||||||| |||||| ||||| || |||||||||||||| |
|
|
| T |
3201 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
3247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 6938287 - 6938345
Alignment:
| Q |
130 |
gtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattg |
188 |
Q |
| |
|
||||| ||||||| || |||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
6938287 |
gtgaaactccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattg |
6938345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 39129296 - 39129349
Alignment:
| Q |
132 |
gaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaa |
185 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
39129296 |
gaagctccctccacccatgcccttgtgtttgggtcaaacgtgtgttaggcccaa |
39129349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 2697802 - 2697854
Alignment:
| Q |
126 |
tgtagtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgtta |
178 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||| |||| ||||||| |
|
|
| T |
2697802 |
tgtagtgaagctccctccgtccctgaccttgcatttggcccaaacatgtgtta |
2697854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 29663225 - 29663197
Alignment:
| Q |
128 |
tagtgaagctccctccgcccctgcccttg |
156 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29663225 |
tagtgaagctccctccgcccctgcccttg |
29663197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University