View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_48 (Length: 260)
Name: NF19787_high_48
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 39929745 - 39929509
Alignment:
| Q |
18 |
aattttgcggtgtgtgccaacatagttgacatgtcttacatctcattcatatgatgttctgtactctattttttgtattaaaagaagnnnnnnnnnngtt |
117 |
Q |
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| T |
39929745 |
aattttgcggtgcgtgccaacatagttgacatgtcttacatctcattcatatgatgttctgtactctattttttgtattaaaagaagtttttgttttgtt |
39929646 |
T |
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| Q |
118 |
tggnnnnnnnntgtc--tattgaaattcaaagtattgcactctatgattttcttaattaataaattgat---nnnnnnnnttagaataagttgacagann |
212 |
Q |
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|| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39929645 |
tgaaaaaaaaatgtctttattgaaattcaaagtattgtactctatgattttcttaattaataaattgataaaaaaaaaaattagaataagttgacagatt |
39929546 |
T |
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| Q |
213 |
nnnnnaattgagcgtatccatatatatgtatgtctct |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39929545 |
tttttaattgagcgtatccatatatatgtatgtctct |
39929509 |
T |
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