View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_52 (Length: 253)
Name: NF19787_high_52
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_52 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 26440316 - 26440091
Alignment:
| Q |
1 |
cctgcgcttccataaacttcacataattgtcacaaatatttctttttgtaccaaagacatctgattaagaagtgtaaaaatcaaagtatccatattataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||| || ||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||||| |
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| T |
26440316 |
cctgcgcttccataaacttcacataattgtcacagataattttttttgtactaaagacagctgatcaataagtgtaaaaatcaaagcatccatattataa |
26440217 |
T |
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| Q |
101 |
ttttttcgaagtgttctgtcttttatatcccataactaaacttcacgtcatgtctgctatgcgcctgggcattctaataacacatgaatactatcttcga |
200 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26440216 |
ttttttcgaagtgttatgtctattatatcccataactaaacttcacgtcatgcctgctgtgcgcctggacattctaataacacatgaatactatcttcga |
26440117 |
T |
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| Q |
201 |
tattactaccacaaagaacacaatct |
226 |
Q |
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||||||||||||||||||||||||| |
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| T |
26440116 |
aattactaccacaaagaacacaatct |
26440091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 7250612 - 7250497
Alignment:
| Q |
5 |
cgcttccataaacttcacataattgtcacaaatatttctttttgtaccaaagacatctgattaagaagtgtaaaaatcaaagtatccatattataatttt |
104 |
Q |
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|||||||| | ||| |||||||| |||||||||| ||| |||| ||||||| || ||||| |||||| |||||||| | | ||||||||||||||||| |
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| T |
7250612 |
cgcttccacatactccacataatcgtcacaaataactctctttggaccaaaggcagctgatcaagaagagtaaaaataagtgcatccatattataatttt |
7250513 |
T |
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| Q |
105 |
ttcgaagtgttctgtc |
120 |
Q |
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| T |
7250512 |
ttcggagagttctgtc |
7250497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 8080059 - 8080115
Alignment:
| Q |
170 |
cattctaataacacatgaatactatcttcgatattactaccacaaagaacacaatct |
226 |
Q |
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| T |
8080059 |
cattctaatatgacacgaatactatcgtcaaaattactaccacaaagcacacaatct |
8080115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21117904 - 21117679
Alignment:
| Q |
1 |
cctgcgcttccataaacttcacataattgtcacaaatatttctttttgtaccaaagacatctgattaagaagtgtaaaaatcaaagtatccatattataa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
21117904 |
cctgcgcttccataaactccacataattgtcacaaataattctttttgtaccaaagacagctgatcaagaagagtaaaaatcaaagcatccatattataa |
21117805 |
T |
|
| Q |
101 |
ttttttcgaagtgttctgtcttttatatcccataactaaacttcacgtcatgtctgctatgcgcctgggcattctaataacacatgaatactatcttcga |
200 |
Q |
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| T |
21117804 |
ttttttcgaagtgttctgtttattatatcccataactaaacttcacgtcatgcctgttgtgcgcctaggcattctaataacacatgaatactatcttcga |
21117705 |
T |
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| Q |
201 |
tattactaccacaaagaacacaatct |
226 |
Q |
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|||| || ||||||||||||||||| |
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| T |
21117704 |
aattattaacacaaagaacacaatct |
21117679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 44840461 - 44840550
Alignment:
| Q |
3 |
tgcgcttccataaacttcacataattgtcacaaatatttctttttgtaccaaagacatctgattaagaagtgtaaaaatcaaagtatccatatt |
96 |
Q |
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| T |
44840461 |
tgcgcttccataaactccacataattgtcacaaataattctttttgt----aagatagctgatcaagaagagtaaaaatcaaagcatccatatt |
44840550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 39649501 - 39649556
Alignment:
| Q |
170 |
cattctaataacacatgaatactatcttcgatattactaccacaaagaacacaatc |
225 |
Q |
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| T |
39649501 |
cattccaacaacacattaatactatcttcataattactaccacaaagaacacaatc |
39649556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 88654 - 88593
Alignment:
| Q |
164 |
cctgggcattctaataacacatgaatactatcttcgatattactaccacaaagaacacaatc |
225 |
Q |
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| T |
88654 |
cctggacattccaacaacacatgaatactatcttcataattactaccacaaagaacacaatc |
88593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 4513071 - 4512891
Alignment:
| Q |
40 |
ttctttttgtaccaaagacatctgattaagaagtgtaaaaatcaaagtatccatattataattttttcgaagtgttctgtcttttatatcccataactaa |
139 |
Q |
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|||| |||| ||||||| || |||| |||||| |||||||| | ||||||||||||||||||||||| || ||| |||| | | |||||||| | | |
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| T |
4513071 |
ttctctttggaccaaaggcagttgatcaagaagagtaaaaataagtgtatccatattataattttttcggagagttttgtcaatcgtgtcccataattga |
4512972 |
T |
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| Q |
140 |
acttcacgtcatgtctgctatgcgcctgggcattctaataacacatgaatactatcttcgata-ttactaccacaaagaaca |
220 |
Q |
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| T |
4512971 |
acctcacgccaagctttccttgcacctgggcattccaacaacacatgaatcttatcttc-atagttactaccacaaagaaca |
4512891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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