View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_56 (Length: 248)
Name: NF19787_high_56
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_56 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 6454587 - 6454794
Alignment:
| Q |
43 |
ggtatatgtaaaagaaag--gttaaatctttaatgtgtattaatccatttagacttggaccaatcaattataggtgagattgatggaaccaatcaatttt |
140 |
Q |
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| T |
6454587 |
ggtatatgtaaaagaaagaggttaaatctttaatgtgtattaatccatttagacttggaccaatcaattataggtgagattgatggaaccaatcaatttt |
6454686 |
T |
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| Q |
141 |
gggtcaagtaggacaatgacctgaaatctcatagcagctcactccccggatgtggatgaaaccgatttcttctccacattgggaggagacaccgatccag |
240 |
Q |
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| T |
6454687 |
gggtcaagtaggacaatgacatgaaatctcatagcagctcactccccgaatgtggatgaaaccgatttcttctccacactgggaggagacaccgatccag |
6454786 |
T |
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| Q |
241 |
gcacctct |
248 |
Q |
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|||||||| |
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| T |
6454787 |
gcacctct |
6454794 |
T |
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