View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_57 (Length: 246)
Name: NF19787_high_57
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 21151624 - 21151854
Alignment:
| Q |
1 |
aaacatcctctgatatagatagtgatattcatgtttcaaaattctggttttatgtatacttgtatgggatcaagtatcgatttttgttgatagaatgtgt |
100 |
Q |
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| T |
21151624 |
aaacatcctctgatatagatagtgatattcatgtttcaagattctggttttatgtatacttgtatgggatcaagtatcgatttttgttgatagaatgtgt |
21151723 |
T |
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| Q |
101 |
gaattgaaatggtagatagagtaaaatactattgaatagtagagtatattggtaagtttgatttgagaaacactaaagtcacacattgcttagtttacac |
200 |
Q |
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| T |
21151724 |
gaattgaaatggtagatagagtaaaatactattgaatagtagagtatattggtaagtttgatttgagaaacactaaagtcacacattgcttagtttacac |
21151823 |
T |
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| Q |
201 |
acattgattagttttcaatgttatataaaga |
231 |
Q |
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| T |
21151824 |
acattgattagttttcaatgttatataaaga |
21151854 |
T |
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Back To:
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 30613461 - 30613384
Alignment:
| Q |
162 |
tttgagaaacactaaagtcacacattgcttagtttacacacattgattagttttcaatgttatataaagagtgttcat |
239 |
Q |
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| T |
30613461 |
tttgaaaaacattaaagtcatacattgcttagtttacacacactggttaatttccagtattatataaggagtgttcat |
30613384 |
T |
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