View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_11 (Length: 459)
Name: NF19787_low_11
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 42239255 - 42239712
Alignment:
| Q |
1 |
aaaaaggattcaattttgatgatgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgttaggt |
100 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239255 |
aaaaaggattcaattttgatcacgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgttaggt |
42239354 |
T |
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| Q |
101 |
gtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaaaccctnnnnnnntcatttctaat |
200 |
Q |
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| T |
42239355 |
gtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaaaccct-aaaaaatcatttctaat |
42239453 |
T |
|
| Q |
201 |
ttgtaggaacaatcagagtttggaatgaaggaa--------gtttacaccaccttcttcatcctaccaaaactactttgttcgcactaaaacatatatgt |
292 |
Q |
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|||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239454 |
ttgttggaacaatcagagtttggattgaaggaatctaaattgtttacaccaccttcttcatcctaccaaaactactttgttcgcactaaaacatatatgt |
42239553 |
T |
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| Q |
293 |
accaaacatagacagttagcatgcagtatctcattgatcatttacaacaatagttgagaaggaaaacaatttatttcacttact------taatgctcta |
386 |
Q |
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| T |
42239554 |
accaaacat-----gttagcatgcaatatctcattgatcatttacaacaaaagttgagaaggaaaacaatttatttcacttacttgaatataatgctcta |
42239648 |
T |
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| Q |
387 |
ttgcgtgccaattgcaccaattacttgaaaactctcttgtattgtagatgcacacaggttctgc |
450 |
Q |
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| T |
42239649 |
ttgcgcgccaattgcaccaattacttgaacactctcttgtattgtagatgcacacaggttctgc |
42239712 |
T |
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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 17649869 - 17649959
Alignment:
| Q |
22 |
atgatcaatttcatcaaattccattatcaaaa-ggtccaatttctt---aatatttgtgttattaacatttcttttgttaggtgtaaatat |
108 |
Q |
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|||||||||||| |||| |||||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17649869 |
atgatcaatttcgtcaagttccattatcaaaaaggtccaatttttttttaatatttgtgttattaacatttattttgttaggtgtaaatat |
17649959 |
T |
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