View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_12 (Length: 452)
Name: NF19787_low_12
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Complemental strand, 6780480 - 6780060
Alignment:
| Q |
10 |
gagagagaagaaaggcagaaaattgaagggaacgagaattttgacgaggtaagaataagaaagctatacatttaaaacggttgaatactgtacagaaata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
6780480 |
gagagagaagaaaggcagaaaattgaagggaacgagaattttgacgaggtaagattaagaaagctatacatttaaaacggtttaatactgtacggaaata |
6780381 |
T |
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| Q |
110 |
tattattttacatttcagtaacaactgctgtcactaatagttagttagataattggttccatttatataacagcaatcagtccgatcaataaattgaaaa |
209 |
Q |
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| T |
6780380 |
tattattttacatttcagtaacaactgctgtcactaatagttagttagataattggttccatttatataaca---atcagtccgatcaataaattgaaaa |
6780284 |
T |
|
| Q |
210 |
tagtagtctgccatacacagtcgtctttatttaataatgctactgattcagattcttatttattgaatattattgtctgatttgtcacgcatgactccaa |
309 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6780283 |
tagtagtctgccatacacattcgtctttatttaataatgctactgattcagattcttatttattgaatattattgtctgatttgtcacgtatgactccaa |
6780184 |
T |
|
| Q |
310 |
tactgtaggttaaagttgcggaaagtctcactgttagaaaagtgatatctgttgacaaacaactgacagtgaagaagcaatttcgggacatcatttcaga |
409 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6780183 |
tactgtaggttaaagttgcggatagtctcactgttagaaaagtgatatctgttgacaaacaactgacagtgaagaagcaatttcgggacatcattccaga |
6780084 |
T |
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| Q |
410 |
ggataattatcctgctgacttctc |
433 |
Q |
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| T |
6780083 |
ggagaattaccctgctgaattctc |
6780060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 185 - 433
Target Start/End: Original strand, 6668208 - 6668455
Alignment:
| Q |
185 |
atcagtccgatcaataaattgaaaatagtagtctgccatacacagtcgtctttatttaataatgctactgattcagattcttatttattgaatattattg |
284 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||| |||| || |||||| ||||||||||| || || ||||||| |
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| T |
6668208 |
atcagtccgatcaataaattgaaaatagtagtctaccataaatagtcatctttatttcttaatattattgattcggattcttatttttt-aacattattg |
6668306 |
T |
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| Q |
285 |
tctgatttgtcacgcatgactccaatactgtaggttaaagttgcggaaagtctcactgttagaaaagtgatatctgttgacaaacaactgacagtgaaga |
384 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6668307 |
tctgatttgtcacgcatgactccaaaactgtaggttaaagttacggaaagtctcactgttagagaagtgatatctgttgacaaacaactgacagtgaaga |
6668406 |
T |
|
| Q |
385 |
agcaatttcgggacatcatttcagaggataattatcctgctgacttctc |
433 |
Q |
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|||| |||| |||||||| | ||||||| ||||| |||||||| ||||| |
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| T |
6668407 |
agcagtttcaggacatcactccagaggagaattaccctgctgaattctc |
6668455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 6667772 - 6667840
Alignment:
| Q |
10 |
gagagagaagaaaggcagaaaattgaagggaacgagaattttgacgaggtaagaataagaaagctatac |
78 |
Q |
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| T |
6667772 |
gagagagaagaaaggcagaaaattgaagggaacgaaaattttgacgaggtaagattaagaaaactatac |
6667840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 433
Target Start/End: Original strand, 6679345 - 6679451
Alignment:
| Q |
327 |
gcggaaagtctcactgttagaaaagtgatatctgttgacaaacaactgacagtgaagaagcaatttcgggacatcatttcagaggataattatcctgctg |
426 |
Q |
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||||||||||| | ||||| ||||| ||||||||||||||||| ||| |||||| || || |||| ||||||||| ||||||| ||||| ||| ||| |
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| T |
6679345 |
gcggaaagtctttcaattagagaagtgctatctgttgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactg |
6679444 |
T |
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| Q |
427 |
acttctc |
433 |
Q |
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| ||||| |
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| T |
6679445 |
aattctc |
6679451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 6668168 - 6668205
Alignment:
| Q |
124 |
tcagtaacaactgctgtcactaatagttagttagataa |
161 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| |
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| T |
6668168 |
tcagtaacaacttctgtccctaatagttagttagataa |
6668205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 6163564 - 6163489
Alignment:
| Q |
278 |
attattgtctgatttgtcacgcatgactccaatactgtaggttaaagttgcggaaagtctcactgttagaaaagtg |
353 |
Q |
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| T |
6163564 |
attattgtctgatttgtcatacatgactccaaaactgtaggttctagttgcggaaagtatctctattagagaagtg |
6163489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 6163658 - 6163624
Alignment:
| Q |
208 |
aatagtagtctgccatacacagtcgtctttattta |
242 |
Q |
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| T |
6163658 |
aatagtagtctgccataaacagtcgtctttattta |
6163624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 6163720 - 6163655
Alignment:
| Q |
132 |
aactgctgtcactaatagttagttagataattggttccatttatataacagcaatcagtccgatcaata |
200 |
Q |
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| T |
6163720 |
aactgctgttagtaataattagttagataattgattccttttatataa---ctatcagtccgatcaata |
6163655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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