View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_15 (Length: 443)
Name: NF19787_low_15
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 19166505 - 19166879
Alignment:
| Q |
22 |
caggaaaggcgtggtgagggataacggtgacagtggagctgagaaggaggttcggatgggg-tatgatgggcagcagacacagttattgaaggagggtgc |
120 |
Q |
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| T |
19166505 |
caggaaaggcgtggtgagggataacggtgatagtggggctgagaaggaggttctgatgggggtatgatgggcagcagacacggttattgaaggagggtgc |
19166604 |
T |
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| Q |
121 |
cggagggatggcagttccaaagaacaaggaagtcgtcgtccttactatt---------------------aaatccgtcgaattggatgaggatttggaa |
199 |
Q |
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| T |
19166605 |
cggagggatggcagttccaaagaacaaggaagtcgtcgtccttactattgctgacgacgggaaggttattaaatccgtcgatttggatgaggatttggaa |
19166704 |
T |
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| Q |
200 |
caacctgagaactttgtactgactggttcagagggcaatttgattaataagggggtgattgagtaccagtttgctgaagaagacagagattgggccggtt |
299 |
Q |
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| T |
19166705 |
caacctgagaactttgtactgactggttcagagggcaatttgattaataagggggtgattgagtaccagtttgctgaagaagacagagattgggccggtt |
19166804 |
T |
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| Q |
300 |
caggtttggtggcaacggttagcacgaggaaacgttggtatcaatacagcaacgtgtggaggatgcggggtttgatac |
377 |
Q |
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| T |
19166805 |
caggtttggtggcaacggttagcacgaggaaacgttggtatcaata---caacgtgtggaggatgcggggtttgatac |
19166879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 357 - 427
Target Start/End: Original strand, 19166899 - 19166969
Alignment:
| Q |
357 |
ggaggatgcggggtttgatacgttgccgtgataatggtgatgttttacaagtatttaatgatgctgctgat |
427 |
Q |
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| T |
19166899 |
ggaggatgcggggtttgatacgttgccgtgataatggtgatgttttacaagtttttaatgatgctgctgat |
19166969 |
T |
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