View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_16 (Length: 426)
Name: NF19787_low_16
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 32744870 - 32745270
Alignment:
| Q |
16 |
aactgaaacataagatgcagcacaactccaatagaaggactcgatatcaattgcagtctgatgctgcgttgtcgatgctggtggaaatatggaggtatga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32744870 |
aactgaaacataagatgcagcacaactccaatagaaggactcgatatcaattgcagtctgatgttgcgttgtcgatgctggtggaaatatggaggtatga |
32744969 |
T |
|
| Q |
116 |
ttgcagattatattgataacagatccacaaagatctaaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaattgtaccag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32744970 |
ttgcagattatattgataacagatccacaaagatctgaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaattgtaccag |
32745069 |
T |
|
| Q |
216 |
aaaatttgttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcagattattgtaagaaaggtctaaact |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32745070 |
aaaatttgttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcaaattattgtaagaaaggtctaaact |
32745169 |
T |
|
| Q |
316 |
ctcgatatttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctcttagttctccaatctct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32745170 |
ctcgatatttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctcttagttctccaatctct |
32745269 |
T |
|
| Q |
416 |
g |
416 |
Q |
| |
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| |
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| T |
32745270 |
g |
32745270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 4911861 - 4912262
Alignment:
| Q |
15 |
caactgaaacataagatgcagcacaactccaatagaaggactcgatatcaattgcagtctgatgctgcgttgtcgatgctggtggaaatatggaggtatg |
114 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
4911861 |
caactgtaacataagatgcaacacaactccaatagaaggactccatatcaattgcggtctgatgttgcgttgtcgatgctggtggaaaaatggaggtatg |
4911960 |
T |
|
| Q |
115 |
attgcagattatattgataacagatccacaaagatctaaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaattgtacca |
214 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
4911961 |
attgcaggttatattgataacagatccacaaagatctgaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaactctacca |
4912060 |
T |
|
| Q |
215 |
gaaaatttgttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcagattattgtaagaaaggtctaaac |
314 |
Q |
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|| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
4912061 |
gagaatttgttatatgagacattgaatatagctaaagagtataaattagtcaggttttgaggtaaggcaccactcaaattattgtaagaaaggtctaaac |
4912160 |
T |
|
| Q |
315 |
tctcgatatttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctcttagttctccaatctc |
414 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| || |||| |||||||||||||| ||||| |
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| T |
4912161 |
tctcaatatttatcaaattgggaaaggttcctggtatcgatcctgagaatcgattgtgcgaaagattcaaggctttaatatctcttagttctccgatctc |
4912260 |
T |
|
| Q |
415 |
tg |
416 |
Q |
| |
|
|| |
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|
| T |
4912261 |
tg |
4912262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 418
Target Start/End: Original strand, 2125310 - 2125702
Alignment:
| Q |
23 |
acataagatgcagcacaactccaatagaaggactcgatatcaattgcagtctgatgctgcgttgtcgatgctggtggaaatatggaggtatgattgcaga |
122 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||| ||| ||||| || || || |||| ||| ||||||| |
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| T |
2125310 |
acataagatgcagcaaaaccccaatagaaggactccatatccattgcagtctgattttgcattgtctccaatgttgagaaaatgg---tatcattgcagc |
2125406 |
T |
|
| Q |
123 |
ttatattgataacagatccacaaagatctaaattacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaattgtaccagaaaattt |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| |
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|
| T |
2125407 |
ttatattgagaacagatccacaaagatctgaattacctctatagttattctcatcaaaatttgcaaactgcattgtggttggaattttcccagacaattt |
2125506 |
T |
|
| Q |
223 |
gttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcagattattgtaagaaaggtctaaactctcgata |
322 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||| |||||||||||||| || || |
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| T |
2125507 |
gttgtatgagacattgaatatggctaaagagtataaatcatttaggttttgaggtattttaccactcaaattattgttggaaaggtctaaactttcaatg |
2125606 |
T |
|
| Q |
323 |
tttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctcttagttctccaatctctgct |
418 |
Q |
| |
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|||||||||||||||||| || ||||||| ||||||||||| |||||| |||| |||||||| ||||| ||||||| ||||||||| ||||||||| |
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| T |
2125607 |
tttatcaaattggaaaagctttctggtattgatcctgataaccgattgtgcgagagattcaaggcaatgatttctcgtagttctccgatctctgct |
2125702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 5183912 - 5183813
Alignment:
| Q |
154 |
attacctctatagttgttctcatcaaagtttgcaaactgcattgtggttggaattgtaccagaaaatttgttgtatgagacattgaatatggctaaagag |
253 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||| || ||||| | || ||| ||||||| ||||||||||| |||||||| || |||||||| |
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| T |
5183912 |
attacctctgtagttgtactcatcaaagtttgcaaattgtcttgtgctaggtggtgttccagaaaggttgttgtatgacacattgaagatttctaaagag |
5183813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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