View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19787_low_18 (Length: 396)
Name: NF19787_low_18
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_18 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 1654170 - 1654550
Alignment:
| Q |
16 |
cagagaccagtggtgatgcggatggttttccatcttcgcaccaccagccaccaccgtttacattgagaaccaaagaaatttggaaagaaggggcgacgaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
1654170 |
cagagaccagaggtgatgcggatggttttccatcttcgcaccaccacccaccgccgtttacattgagaaccaaagaaatttggaaagaaggggcggcaga |
1654269 |
T |
|
| Q |
116 |
gataaggagttagagagaatccagagaaaggtactttttagagagagaaagttttgtgttgacaacataaagagaaattaactacacatattgtataaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1654270 |
gataaggagttagagagaatccagagaaaggtactttttagagagagaaagttttgtgttgacaacataaagagaaattaactacacatattgtataaat |
1654369 |
T |
|
| Q |
216 |
cttattcattcatggatcgtgaactcggttagttctcagattgttcagtcttatttaataagaatgttgttgatgtttggaaagagttaaaggaacaatt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1654370 |
cttattcattcatggatcgtgaactcggttagttctcagattgttcagtcttatttattaagaatgttgttgatgtttggaaagagttaaaggaacaatt |
1654469 |
T |
|
| Q |
316 |
ttccatgtttgatcacattcatgttgctaatccatcatcaatcctttgaaacaaggatcactttccgttaccgattacttc |
396 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1654470 |
ttccaagtttgatcacattcatgttgctaatccatcatcaattctttgaaacaaggttcactttccgttactgattacttc |
1654550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 28062168 - 28062304
Alignment:
| Q |
213 |
aatcttattcattcatggatcgtgaactcggttagttctcagattgttcagtct----tatttaataagaatgttgttgatgtttggaaagagttaaagg |
308 |
Q |
| |
|
|||||||| |||||| ||||| ||| | |||||||||||||||| || ||| |||||| | ||||||||||||||||||||||||| || ||| |
|
|
| T |
28062168 |
aatcttatatattcatagatcgcgaattatgttagttctcagattgcacaatctatcatatttatttagaatgttgttgatgtttggaaagaattgaaga |
28062267 |
T |
|
| Q |
309 |
aacaattttccatgtttgatcacattcatgttgctaa |
345 |
Q |
| |
|
||||||||||| || ||||||||||| | ||||||| |
|
|
| T |
28062268 |
gacaattttccaagtctgatcacattcgtattgctaa |
28062304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 28072593 - 28072729
Alignment:
| Q |
213 |
aatcttattcattcatggatcgtgaactcggttagttctcagattgttcagtct----tatttaataagaatgttgttgatgtttggaaagagttaaagg |
308 |
Q |
| |
|
|||||||| |||||| ||||| ||| | |||||||||||||||| || ||| |||||| | ||||||||||||||||||||||||| || ||| |
|
|
| T |
28072593 |
aatcttatatattcatagatcgcgaattatgttagttctcagattgcacaatctatcatatttatttagaatgttgttgatgtttggaaagaattgaaga |
28072692 |
T |
|
| Q |
309 |
aacaattttccatgtttgatcacattcatgttgctaa |
345 |
Q |
| |
|
||||||||||| || ||||||||||| | ||||||| |
|
|
| T |
28072693 |
gacaattttccaagtctgatcacattcgtattgctaa |
28072729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 15049535 - 15049437
Alignment:
| Q |
27 |
ggtgatgcggatggtt-ttccatcttcgcaccaccagccaccaccg---tttacattgagaaccaaagaaatttggaaagaaggggcgacgaagataag |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
15049535 |
ggtgatgcggatggttgttccatcttcgcaccttcagccaccaccgccgtttacattgtgaaccaaaggaatttggaaagaaggggcgacagagataag |
15049437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 26841489 - 26841401
Alignment:
| Q |
20 |
gaccagtggtgatgcggatggtt-ttccatcttcgcaccaccagccaccaccgtttacattgagaaccaaagaaatttggaaagaaggg |
107 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
26841489 |
gaccagtggtgatgcggatggctgttccatattcgcaccatcagccaccaccgtttacattatgaaccaaaagaatttggaaagaaggg |
26841401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 12792845 - 12792810
Alignment:
| Q |
43 |
ttccatcttcgcaccaccagccaccaccgtttacat |
78 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12792845 |
ttccatcttcgcaccaccagccaccaccatttacat |
12792810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 5745534 - 5745492
Alignment:
| Q |
27 |
ggtgatgcggatggtt-ttccatcttcgcaccaccagccacca |
68 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
5745534 |
ggtgatgcggatggatgttccatcttcgcaccaccagccacca |
5745492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 22334 - 22376
Alignment:
| Q |
27 |
ggtgatgcggatggtt-ttccatcttcgcaccaccagccacca |
68 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
22334 |
ggtgatgcggatggatgttccatcttcgcaccaccagccacca |
22376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University