View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_2 (Length: 707)

Name: NF19787_low_2
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_2
NF19787_low_2
[»] chr8 (12 HSPs)
chr8 (174-452)||(3423913-3424198)
chr8 (1-177)||(3424489-3424665)
chr8 (481-691)||(3423669-3423881)
chr8 (494-639)||(34653276-34653420)
chr8 (525-615)||(13636244-13636334)
chr8 (525-615)||(13736657-13736747)
chr8 (223-288)||(3404927-3404992)
chr8 (500-606)||(24334458-24334564)
chr8 (481-575)||(22488845-22488939)
chr8 (503-616)||(41086819-41086932)
chr8 (534-605)||(3670555-3670626)
chr8 (516-605)||(44167176-44167265)
[»] chr2 (12 HSPs)
chr2 (481-617)||(16209793-16209929)
chr2 (514-616)||(4818743-4818843)
chr2 (522-627)||(29140163-29140269)
chr2 (535-617)||(38373365-38373447)
chr2 (545-606)||(19028478-19028539)
chr2 (516-617)||(30554532-30554638)
chr2 (503-593)||(14818824-14818914)
chr2 (528-601)||(4604675-4604747)
chr2 (481-577)||(8793850-8793946)
chr2 (560-623)||(18967757-18967820)
chr2 (500-616)||(34466981-34467096)
chr2 (545-617)||(35005222-35005294)
[»] chr7 (9 HSPs)
chr7 (492-617)||(45411265-45411390)
chr7 (505-605)||(46288819-46288919)
chr7 (519-609)||(40024192-40024282)
chr7 (561-622)||(21946151-21946212)
chr7 (486-606)||(2256404-2256523)
chr7 (481-615)||(23070195-23070329)
chr7 (503-574)||(23705039-23705110)
chr7 (538-609)||(31245262-31245333)
chr7 (539-604)||(12139824-12139887)
[»] chr1 (11 HSPs)
chr1 (501-634)||(30264067-30264205)
chr1 (501-609)||(30350735-30350843)
chr1 (481-600)||(9552818-9552937)
chr1 (491-615)||(46536653-46536777)
chr1 (544-615)||(26768708-26768778)
chr1 (517-614)||(12188639-12188736)
chr1 (522-577)||(50014189-50014244)
chr1 (539-617)||(8772434-8772512)
chr1 (544-576)||(52426245-52426277)
chr1 (555-616)||(16632750-16632811)
chr1 (110-155)||(43578800-43578845)
[»] chr5 (9 HSPs)
chr5 (486-627)||(30251934-30252075)
chr5 (492-608)||(1637963-1638079)
chr5 (517-609)||(26402019-26402111)
chr5 (539-615)||(10418601-10418677)
chr5 (481-533)||(20429799-20429851)
chr5 (554-617)||(25731219-25731282)
chr5 (501-617)||(12487100-12487217)
chr5 (481-569)||(34596489-34596578)
chr5 (516-617)||(42641116-42641217)
[»] chr3 (11 HSPs)
chr3 (482-615)||(35744679-35744814)
chr3 (521-642)||(20137590-20137709)
chr3 (488-586)||(40394905-40395003)
chr3 (517-615)||(47510750-47510848)
chr3 (516-604)||(29398268-29398356)
chr3 (521-642)||(23278016-23278135)
chr3 (548-620)||(41632026-41632098)
chr3 (501-576)||(11529304-11529379)
chr3 (535-577)||(42426246-42426288)
chr3 (481-617)||(4195306-4195442)
chr3 (531-615)||(44765299-44765383)
[»] chr4 (11 HSPs)
chr4 (481-617)||(16502389-16502524)
chr4 (517-617)||(14124203-14124303)
chr4 (525-609)||(51088916-51089000)
chr4 (517-577)||(2392597-2392657)
chr4 (481-533)||(5324605-5324657)
chr4 (522-642)||(34341398-34341518)
chr4 (545-576)||(32906156-32906187)
chr4 (486-620)||(41259984-41260118)
chr4 (503-579)||(53650078-53650155)
chr4 (503-615)||(33027147-33027258)
chr4 (548-584)||(42009690-42009726)
[»] chr6 (3 HSPs)
chr6 (489-608)||(2223669-2223788)
chr6 (517-627)||(23131454-23131564)
chr6 (535-617)||(29694306-29694388)
[»] scaffold0007 (1 HSPs)
scaffold0007 (539-616)||(246547-246624)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 174 - 452
Target Start/End: Complemental strand, 3424198 - 3423913
Alignment:
Q  174 tctaaagtaaatgaaaaaacggttggccttcttttatattgactaaaccatacaatttcaacaattacataataccaatagaggagctattccaaactag 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3424198 tctaaagtaaatgaaaaaacggttggccttcttttatattgactaaaccatacaatttcaacaattacataataccaatagaggagctattccaaactag 3424099  T
Q  274 tgctcaaagttagaac-------atacgtactttatttccacaaaatattgtcctcctaacagttatatagcactatacattgtctagataagcaatcat 366  Q
    ||||||||||||||||       |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3424098 tgctcaaagttagaacttagaacatacgtccttcatttccacaaaatattgtcctcctaacagttatatagcactatacattgtctagttaagcaatcat 3423999  T
Q  367 gtggctaacaatagcaagacatagaacttgttgattgggagaaaacaagcattatttgtgaaattatgggtcttaattataccgca 452  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3423998 gtggctaacaatagcaagacatagaacttgttgaatgggagaaaacaagcattatttgtgaaattgtgggtcttaattataccgca 3423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 3424665 - 3424489
Alignment:
Q  1 tcttagatcataaacaaggttttaaatacgggtccattacctgttttcaggatgagaaatcacagcaaaacatttgttaccatcatcacaaaaccttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3424665 tcttagatcataaacaaggttttaaatacgggtccattacctgttttcaggatgagaaatcacagcaaaacatttgttaccatcatcacaaaaccttgat 3424566  T
Q  101 atggccataaaaactctgttacgagtgtgacacaccatcatggaagcgaaaaacattcattttccttcctgcctcta 177  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3424565 atggccataaaaactctgttacgaatgtgacacaccatcatggaagcgaaaaacattcattttccttcctgcctcta 3424489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 481 - 691
Target Start/End: Complemental strand, 3423881 - 3423669
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 580  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  3423881 ctaatcagtgccttaagggtaatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaag 3423782  T
Q  581 ttttagttacaaagttacttattttagtattttaaccgatacctcaacgacactagttagca--nnnnnnnnnngaacaaaatttgagatattatcccga 678  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  3423781 ttttagttacaaaattacttattttagtactttaaccgatacctcaacgacactagttagcatttttttttttggaacaaaatttgagatattatcccga 3423682  T
Q  679 tttacttgatatt 691  Q
    ||||| |||||||    
T  3423681 tttacgtgatatt 3423669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 494 - 639
Target Start/End: Original strand, 34653276 - 34653420
Alignment:
Q  494 taagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 593  Q
    |||||| |||||||||  ||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||||||||||||| |||| ||   ||     
T  34653276 taagggcaatggttaaggaatctattagtagaaattatgtcttgaaaacgcaagtttttacttttgtctt-gcaataattacacaactttttgtagtaat 34653374  T
Q  594 gttacttattttagtattttaaccgatacctcaacgacactagtta 639  Q
    |||||||||||||||| ||||| | || |||||| | |||||||||    
T  34653375 gttacttattttagtactttaatcaatgcctcaagggcactagtta 34653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 525 - 615
Target Start/End: Complemental strand, 13636334 - 13636244
Alignment:
Q  525 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 615  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13636334 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13636244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 525 - 615
Target Start/End: Complemental strand, 13736747 - 13736657
Alignment:
Q  525 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 615  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13736747 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 3404927 - 3404992
Alignment:
Q  223 atacaatttcaacaattacataataccaatagaggagctattccaaactagtgctcaaagttagaa 288  Q
    ||||||||||||||||||   || ||||| |||||||||| |||||||||||||||||||||||||    
T  3404927 atacaatttcaacaattattaaaaaccaaaagaggagctactccaaactagtgctcaaagttagaa 3404992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 606
Target Start/End: Complemental strand, 24334564 - 24334458
Alignment:
Q  500 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 599  Q
    ||||||||||  |||| ||||||||||||| ||||||  |||| |||||||||| |||| |||| | ||||||||||||| ||||  || |||| || ||    
T  24334564 taatggttaaggaattcattagtagaaattttgttttaaaaatacaagtttttacttttctcttggtaataattacacaactttttattgcaaaattgct 24334465  T
Q  600 tatttta 606  Q
    |||||||    
T  24334464 tatttta 24334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 575
Target Start/End: Complemental strand, 22488939 - 22488845
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattac 575  Q
    |||| ||||||| ||||||||||||||||  | |  |||| |||||| | |||||||||||| |||||||| | |||| ||||||||||| ||||    
T  22488939 ctaaccagtgccctaagggtaatggttaaggattccattaatagaaactttgttttggaaatacaagttttcacttttttcttagcaatagttac 22488845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 616
Target Start/End: Original strand, 41086819 - 41086932
Alignment:
Q  503 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttactta 601  Q
    |||||||| ||| |||| ||||||| | ||| |||||||| ||| |||||| |||| |||| | ||||||||||||| |||||| ||| ||| |||||||    
T  41086819 tggttaaagaatctatttgtagaaactttgtcttggaaatacaaatttttacttttatcttggtaataattacacaacatttta-ttaaaaaattactta 41086917  T
Q  602 ttttagtattttaac 616  Q
    |||| ||| ||||||    
T  41086918 ttttggtactttaac 41086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 605
Target Start/End: Complemental strand, 3670626 - 3670555
Alignment:
Q  534 tttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 605  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||| ||||   || ||| |||||||||||    
T  3670626 tttggaaatacaagtttttaattttgttttaacaataattacacaactttttaataaaaacttacttatttt 3670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 605
Target Start/End: Original strand, 44167176 - 44167265
Alignment:
Q  516 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 605  Q
    ||||| |||||| | ||| |||||||| ||| | |||| |||| |||||||||| ||||||||| |||| | | |||| |||||||||||    
T  44167176 tattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 481 - 617
Target Start/End: Original strand, 16209793 - 16209929
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 580  Q
    |||||||||| |||||||| ||||||||| ||||  | ||||||||| | |||||||||||| ||||| |||| |||||||||||||||| ||||||||     
T  16209793 ctaatcagtgtcttaagggcaatggttaagaaatccaatagtagaaactttgttttggaaatacaagtgtttacttttgtcttagcaatagttacacaac 16209892  T
Q  581 ttttagttacaaagttacttattttagtattttaacc 617  Q
    |||| |||  ||||||||||||||||||| |||||||    
T  16209893 tttttgttttaaagttacttattttagtactttaacc 16209929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 616
Target Start/End: Original strand, 4818743 - 4818843
Alignment:
Q  514 tttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttt 613  Q
    |||||||||||||||| || || |||||| |||||||||| |||| |||||  ||||||||||||| ||||| || |||||||||||||||||||| |||    
T  4818743 tttattagtagaaattttgctt-ggaaattcaagtttttacttttatcttaataataattacacaattttta-tttcaaagttacttattttagtacttt 4818840  T
Q  614 aac 616  Q
    |||    
T  4818841 aac 4818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 522 - 627
Target Start/End: Complemental strand, 29140269 - 29140163
Alignment:
Q  522 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaaccgat 620  Q
    |||||||| |||  || |||| |||||||||||||||  |||||||||||||||||||  |||| ||| |||| ||||||||||||||| ||||||| ||    
T  29140269 tagaaattttgtcctgaaaatacaagtttttattttttccttagcaataattacacaatttttttgtttcaaaattacttattttagtactttaaccaat 29140170  T
Q  621 acctcaa 627  Q
    | |||||    
T  29140169 atctcaa 29140163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 617
Target Start/End: Original strand, 38373365 - 38373447
Alignment:
Q  535 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 617  Q
    |||||||| |||||||||| |||| |||||||||||||||||| | |||| | | |||| |||||||||||| ||||||||||    
T  38373365 ttggaaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatattttaacc 38373447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  545 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 606  Q
    ||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactttttgttgcaaagttacttatttta 19028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 516 - 617
Target Start/End: Complemental strand, 30554638 - 30554532
Alignment:
Q  516 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac-----aaagttacttattttagtat 610  Q
    |||||||||||||||||| ||| |||||||  |||||| |||||||||| || ||||||||||| |||| ||| |     ||||| |||||||||| |||    
T  30554638 tattagtagaaattatgtcttgaaaatgcacatttttacttttgtcttaacattaattacacaattttttgttgcaaattaaagtaacttattttaatat 30554539  T
Q  611 tttaacc 617  Q
    |||||||    
T  30554538 tttaacc 30554532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 593
Target Start/End: Complemental strand, 14818914 - 14818824
Alignment:
Q  503 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 593  Q
    |||||||| ||| |||||| ||||| |  |||||| |||||||| |||||| |||||| ||||||||||||| |||| |||| | ||||||    
T  14818914 tggttaaagaatctattagaagaaacttggttttgaaaatgcaaatttttacttttgttttagcaataattatacaattttttgatacaaa 14818824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 601
Target Start/End: Complemental strand, 4604747 - 4604675
Alignment:
Q  528 ttatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactta 601  Q
    |||||| ||||||||||||||||| |||| |||||||||| ||||||||||| |||| ||| |  |||||||||    
T  4604747 ttatgtcttggaaatgcaagtttt-atttctgtcttagcagtaattacacaactttttgttgcttagttactta 4604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 577
Target Start/End: Complemental strand, 8793946 - 8793850
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 577  Q
    |||| ||||||| |||||| | |||||||  ||| || || |||||| | ||| ||||||||  ||||||||||||||||||| |||||||| ||||    
T  8793946 ctaaccagtgccctaagggcattggttaaggaatctactaatagaaactttgtcttggaaatataagtttttatttttgtcttggcaataatcacac 8793850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 623
Target Start/End: Original strand, 18967757 - 18967820
Alignment:
Q  560 tcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatacc 623  Q
    ||||| |||||||||||||| |||| ||| |||| |||| ||||||| |||||||||| |||||    
T  18967757 tcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaaccaatacc 18967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 500 - 616
Target Start/End: Original strand, 34466981 - 34467096
Alignment:
Q  500 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 599  Q
    |||| ||||| ||||| ||||||| ||| | ||||||| ||||| || |||||| |||  | |||||||||||||||||| |||   ||| ||| |||||    
T  34466981 taatagttaagaaattcattagtaaaaaatttgttttgaaaatgtaaatttttagttta-tgttagcaataattacacaactttatattataaatttact 34467079  T
Q  600 tattttagtattttaac 616  Q
    ||||||| || ||||||    
T  34467080 tattttaatactttaac 34467096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 545 - 617
Target Start/End: Complemental strand, 35005294 - 35005222
Alignment:
Q  545 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 617  Q
    |||| |||| |||| |||||||||| ||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaacc 35005222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 492 - 617
Target Start/End: Complemental strand, 45411390 - 45411265
Alignment:
Q  492 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 591  Q
    |||||| | |||||||||| |||| |||  ||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||| || |||| |||| |    
T  45411390 cttaagagcaatggttaaagaattcatttatagaaattatgttttagaaatgcaagtttttacttttatctcaacaataattacataactttttgttata 45411291  T
Q  592 aagttacttattttagtattttaacc 617  Q
    |||||||||||||||||| |||||||    
T  45411290 aagttacttattttagtactttaacc 45411265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 505 - 605
Target Start/End: Original strand, 46288819 - 46288919
Alignment:
Q  505 gttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 604  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||  || |||| || |||||||    
T  46288819 gttaaaaaatttattagtagaaattttgtcttaaaaatgcaagtttttgtttttgtcttagcaataattacataattttttattgcaaaattgcttattt 46288918  T
Q  605 t 605  Q
    |    
T  46288919 t 46288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 519 - 609
Target Start/End: Original strand, 40024192 - 40024282
Alignment:
Q  519 tagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 609  Q
    ||||| ||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||  || ||||||||||||| ||||||    
T  40024192 tagtataaattatgttttgcaaatgcaagtttttacttttattttagcaataattacacaactttttattgcaaagttacttatgttagta 40024282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 21946212 - 21946151
Alignment:
Q  561 cttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatac 622  Q
    ||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||| ||||    
T  21946212 cttagtaataattacacaactttttattgcaaagttacttattttagtattttaaccaatac 21946151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 606
Target Start/End: Original strand, 2256404 - 2256523
Alignment:
Q  486 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 585  Q
    ||||||||||||||||||| ||||  | |  |||| |||||| ||||| || ||||||||||| ||||||||| |||||| ||| ||||||| | ||||     
T  2256404 cagtgccttaagggtaatgattaaggattccattaatagaaactatgtcttagaaatgcaagtatttattttt-tcttaggaatgattacaccacttttc 2256502  T
Q  586 gttacaaagttacttatttta 606  Q
    | | |||| ||||||||||||    
T  2256503 gatgcaaacttacttatttta 2256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 615
Target Start/End: Original strand, 23070195 - 23070329
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 580  Q
    |||| ||||||| |||||  ||||||||| || |  |||| |||||| | ||| |||||||| ||||| |||| |||| |||||||||| ||||||| |     
T  23070195 ctaaccagtgccctaaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattacaccac 23070294  T
Q  581 ttttagttacaaagttacttattttagtattttaa 615  Q
    |||| | | |||| |||||||||||| || |||||    
T  23070295 ttttcgatgcaaatttacttattttaatactttaa 23070329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 574
Target Start/End: Complemental strand, 23705110 - 23705039
Alignment:
Q  503 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataatta 574  Q
    |||||||| ||| ||||||| |||||| ||| ||||||||||| ||||||| ||||  |||| |||||||||    
T  23705110 tggttaaagaatctattagttgaaattttgtcttggaaatgcatgtttttactttttccttaacaataatta 23705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 609
Target Start/End: Original strand, 31245262 - 31245333
Alignment:
Q  538 gaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 609  Q
    ||||| ||||| || | ||||||||||||||||||||||| | |||| | | |||| |||||||||||||||    
T  31245262 gaaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagta 31245333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 604
Target Start/End: Original strand, 12139824 - 12139887
Alignment:
Q  539 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 604  Q
    |||| |||||||||||||  |||| |||||||||||||||| ||||  || |||||||||||||||    
T  12139824 aaatacaagtttttattt--gtctcagcaataattacacaactttttatttcaaagttacttattt 12139887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 634
Target Start/End: Original strand, 30264067 - 30264205
Alignment:
Q  501 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaa-----taattacacaaattttagttacaaagt 595  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||| |||     ||||||||||| |||| |||  |||||    
T  30264067 aatggttaagaaatttattagtagaaattttgttttgaaaatgtaagtttttacttttgtcttatcaataatttaattacacaattttttgttgtaaagt 30264166  T
Q  596 tacttattttagtattttaaccgatacctcaacgacact 634  Q
    ||||||||||| || ||||||  ||| ||||| ||||||    
T  30264167 tacttattttaataatttaacaaatatctcaatgacact 30264205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 501 - 609
Target Start/End: Complemental strand, 30350843 - 30350735
Alignment:
Q  501 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactt 600  Q
    |||||||||  ||| ||||||||| |||||||| ||||||||||||| ||||  |||| |||||||||| ||||||||| | ||  || |||||||||||    
T  30350843 aatggttaaggaatctattagtaggaattatgtcttggaaatgcaagcttttgcttttatcttagcaatgattacacaattgtttattgcaaagttactt 30350744  T
Q  601 attttagta 609  Q
    |||||||||    
T  30350743 attttagta 30350735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 600
Target Start/End: Complemental strand, 9552937 - 9552818
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 580  Q
    |||| ||||| |||||||| |||| ||||| ||| ||||| || |||||   |||||||||||||||| |||| |||||||||| |||||||||||||      
T  9552937 ctaaccagtgtcttaagggcaatgattaaagaatctattaataaaaatttcattttggaaatgcaagtatttacttttgtcttatcaataattacacacc 9552838  T
Q  581 ttttagttacaaagttactt 600  Q
    |||| |||  ||||||||||    
T  9552837 tttttgttgtaaagttactt 9552818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 491 - 615
Target Start/End: Complemental strand, 46536777 - 46536653
Alignment:
Q  491 ccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac 590  Q
    ||||||||  ||| ||||||||||| || |||| ||||| | ||||| |||| |||||||||| |||||||||| |||||| ||||||| |||   || |    
T  46536777 ccttaaggacaattgttaaaaaattcatcagtacaaattctattttgaaaatacaagtttttacttttgtcttatcaataactacacaactttgtattgc 46536678  T
Q  591 aaagttacttattttagtattttaa 615  Q
    ||| |||||||||||| || |||||    
T  46536677 aaaattacttattttaatactttaa 46536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 615
Target Start/End: Complemental strand, 26768778 - 26768708
Alignment:
Q  544 caagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 615  Q
    ||||||||||||||||||||| | ||||| ||||||||||| | |||||| ||||||||||||||| |||||    
T  26768778 caagtttttatttttgtcttatctataatcacacaaatttt-gatacaaatttacttattttagtaatttaa 26768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 614
Target Start/End: Complemental strand, 12188736 - 12188639
Alignment:
Q  517 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttta 614  Q
    |||| |||||| | ||| |||||||| ||| |||||| |||| |||||||||||||||||| | ||||   |||||| ||||||||||||||| ||||    
T  12188736 attaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaaaattacttattttagtacttta 12188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 522 - 577
Target Start/End: Original strand, 50014189 - 50014244
Alignment:
Q  522 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 577  Q
    |||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  50014189 tagaaactttgtttttgaaatacaaatttttatttttgtcttagcaataattacac 50014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 8772434 - 8772512
Alignment:
Q  539 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 617  Q
    |||| ||||| |||| ||||||||| ||||||||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  8772434 aaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaacc 8772512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 576
Target Start/End: Complemental strand, 52426277 - 52426245
Alignment:
Q  544 caagtttttatttttgtcttagcaataattaca 576  Q
    |||||||||||||||||||||||||||||||||    
T  52426277 caagtttttatttttgtcttagcaataattaca 52426245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 616
Target Start/End: Original strand, 16632750 - 16632811
Alignment:
Q  555 ttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 616  Q
    ||||||||| | ||||||||||||| ||||  |||||||||| ||||||||| || ||||||    
T  16632750 ttttgtcttggtaataattacacaattttttattacaaagttgcttattttaatactttaac 16632811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 43578800 - 43578845
Alignment:
Q  110 aaaactctgttacgagtgtgacacaccatcatggaagcgaaaaaca 155  Q
    |||||| |||||||| || |||||||||| ||||||||||||||||    
T  43578800 aaaactttgttacgaatgcgacacaccattatggaagcgaaaaaca 43578845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 486 - 627
Target Start/End: Original strand, 30251934 - 30252075
Alignment:
Q  486 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 585  Q
    ||||||| |||||| |||||||||  | |  |||| |||||||| ||| |||||||| ||||| |||| |||| |||||||||||||||||| | ||||     
T  30251934 cagtgccctaagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttc 30252033  T
Q  586 gttacaaagttacttattttagtattttaaccgatacctcaa 627  Q
    | ||||||  || ||||||||||| ||||||| |||||||||    
T  30252034 gatacaaatatatttattttagtactttaaccaatacctcaa 30252075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 492 - 608
Target Start/End: Original strand, 1637963 - 1638079
Alignment:
Q  492 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 591  Q
    |||||||| |||||||||  | | ||||| || ||||| ||| |||||||| ||| |||||| |||| |||||||||||||||||||| |||| | | ||    
T  1637963 cttaagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgca 1638062  T
Q  592 aagttacttattttagt 608  Q
    || ||| ||||||||||    
T  1638063 aacttatttattttagt 1638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 517 - 609
Target Start/End: Original strand, 26402019 - 26402111
Alignment:
Q  517 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 609  Q
    ||||||||||||| ||| ||||||||||||| ||| | |||||||||| |||| ||||||||| ||||  ||  ||| |||||||||||||||    
T  26402019 attagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactttttattgaaaaattacttattttagta 26402111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 615
Target Start/End: Complemental strand, 10418677 - 10418601
Alignment:
Q  539 aaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaa 615  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||||||||| || |||||    
T  10418677 aaatacaagtttttatttttgttttaacaataattacacaacattttattt-caaagttacttattttaatactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 533
Target Start/End: Complemental strand, 20429851 - 20429799
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 533  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  20429851 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 20429799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 617
Target Start/End: Complemental strand, 25731282 - 25731219
Alignment:
Q  554 tttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 617  Q
    ||||| |||||||||||||||||||| ||||   | |||| ||||||||||||||| |||||||    
T  25731282 tttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaacc 25731219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 617
Target Start/End: Original strand, 12487100 - 12487217
Alignment:
Q  501 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtct-tagcaataattacacaaattttagttacaaagttact 599  Q
    |||||||||  ||| |||||||||||||| ||| ||| |||| ||| |||||| ||||||||   | ||||||||||||| | || |||  |||||||||    
T  12487100 aatggttaaggaatctattagtagaaattttgtcttgaaaatacaaatttttacttttgtctcgggtaataattacacaactcttcgttgtaaagttact 12487199  T
Q  600 tattttagtattttaacc 617  Q
    | ||||| || |||||||    
T  12487200 tgttttaatactttaacc 12487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 569
Target Start/End: Original strand, 34596489 - 34596578
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagt-ttttatttttgtcttagcaat 569  Q
    |||| ||||||  ||| ||||||||||| ||| |||||||||| ||||| | | |||| ||| ||||| |||||||||| ||||||||||    
T  34596489 ctaaccagtgctctaaaggtaatggttataaattttattagtaaaaattttatcttgggaatacaagtattttatttttttcttagcaat 34596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 617
Target Start/End: Complemental strand, 42641217 - 42641116
Alignment:
Q  516 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 615  Q
    ||||| |||||| | ||| ||| |||| ||||| |||| |||| ||||| |||| ||||||| | |||| | | |||| ||||||||||||||| |||||    
T  42641217 tattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaacttacttattttagtactttaa 42641118  T
Q  616 cc 617  Q
    ||    
T  42641117 cc 42641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 482 - 615
Target Start/End: Original strand, 35744679 - 35744814
Alignment:
Q  482 taatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaat 581  Q
    ||||||||||  || | ||| ||||||| ||||  |||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||| ||    
T  35744679 taatcagtgcactatgagtattggttaagaaatccattagtagaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatat 35744777  T
Q  582 t---ttagttacaaagttacttattttagtattttaa 615  Q
    |   || |||||||| |||||||||||| || |||||    
T  35744778 ttaatttgttacaaaattacttattttaatactttaa 35744814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 642
Target Start/End: Original strand, 20137590 - 20137709
Alignment:
Q  521 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 620  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||||||||||||||| | ||||| ||    
T  20137590 gtagaaattttgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttacttattttagtactctaaccaat 20137687  T
Q  621 acctcaacgacactagttagca 642  Q
      | ||| | ||||||||||||    
T  20137688 gtcccaagggcactagttagca 20137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 586
Target Start/End: Complemental strand, 40395003 - 40394905
Alignment:
Q  488 gtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttag 586  Q
    ||||| ||||| ||||| ||||  |||||||||||||||||| | | ||  ||||| |||||||||||||| | |||| ||||||||||||| ||||||    
T  40395003 gtgccataaggataatgattaaggaatttattagtagaaattttatcttaaaaatgtaagtttttatttttattttagtaataattacacaacttttag 40394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 615
Target Start/End: Complemental strand, 47510848 - 47510750
Alignment:
Q  517 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 615  Q
    |||| |||||| ||||| |||||||| ||| | ||| ||||| ||||| |||||||||||| | |||| | |||||| ||||||||||||||| |||||    
T  47510848 attaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaaacttacttattttagtactttaa 47510750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 604
Target Start/End: Original strand, 29398268 - 29398356
Alignment:
Q  516 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 604  Q
    |||||||||||||| | |||||||||||||| ||||||| | | |  |||||||| |||||||| |||| |||  ||||||||||||||    
T  29398268 tattagtagaaattttattttggaaatgcaaatttttatctctctaatagcaatagttacacaactttttgttgtaaagttacttattt 29398356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 521 - 642
Target Start/End: Complemental strand, 23278135 - 23278016
Alignment:
Q  521 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 620  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||  ||||||||||| | ||||| ||    
T  23278135 gtagaaattctgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttgtttattttagtactctaaccaat 23278038  T
Q  621 acctcaacgacactagttagca 642  Q
      ||||| | ||||||||||||    
T  23278037 gtctcaagggcactagttagca 23278016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 620
Target Start/End: Original strand, 41632026 - 41632098
Alignment:
Q  548 tttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 620  Q
    |||||||||||||||||| ||||||||||| | ||||  || |||| || |||||||||| ||||||| ||||    
T  41632026 tttttatttttgtcttagtaataattacactattttttattgcaaacttgcttattttagaattttaatcgat 41632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 576
Target Start/End: Original strand, 11529304 - 11529379
Alignment:
Q  501 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattaca 576  Q
    |||||||||| |||  |||||||||| || ||| ||||| ||||||||||||| |||| |||| | ||||||||||    
T  11529304 aatggttaaagaatccattagtagaagttttgtcttggagatgcaagtttttacttttatcttggtaataattaca 11529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 42426288 - 42426246
Alignment:
Q  535 ttggaaatgcaagtttttatttttgtcttagcaataattacac 577  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  42426288 ttggaaatataagtttttatttttgtcttaacaataattacac 42426246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 617
Target Start/End: Original strand, 4195306 - 4195442
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagttttta-tttttgtcttagcaataattacacaa 579  Q
    |||| |||||||||||||| |||||||||  | |  |||| ||| |||| |||||||||||| ||| | |||| ||||  ||||||||| |||||||| |    
T  4195306 ctaaccagtgccttaagggcaatggttaaggattccattaatagtaattttgttttggaaatacaattctttacttttcttcttagcaa-aattacacca 4195404  T
Q  580 attttagttacaaagttacttattttagtattttaacc 617  Q
     ||||   | |||| ||||||||||||||| |||||||    
T  4195405 tttttttatgcaaacttacttattttagtactttaacc 4195442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 615
Target Start/End: Original strand, 44765299 - 44765383
Alignment:
Q  531 tgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 615  Q
    |||||||||||| ||||| |||| || | |||||||||||||||||| | ||||   | |||| |||||||||||| || |||||    
T  44765299 tgttttggaaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaa 44765383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 617
Target Start/End: Original strand, 16502389 - 16502524
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 580  Q
    |||| ||||||| |||||| |||||||||  |||  ||||||||||| | ||| |||||||| ||| |||||| |||| |||| |||||| ||||||||     
T  16502389 ctaaccagtgccctaagggcaatggttaaggaatccattagtagaaactttgtcttggaaatacaaattttta-ttttctcttggcaatatttacacaac 16502487  T
Q  581 ttttagttacaaagttacttattttagtattttaacc 617  Q
    |||| |||  | ||||||||||||||||| |||||||    
T  16502488 tttttgttttagagttacttattttagtactttaacc 16502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 617
Target Start/End: Complemental strand, 14124303 - 14124203
Alignment:
Q  517 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 616  Q
    |||| |||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||||| | |||| | | |||| |||||||||||| || ||||||    
T  14124303 attaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatactttaac 14124204  T
Q  617 c 617  Q
    |    
T  14124203 c 14124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 609
Target Start/End: Complemental strand, 51089000 - 51088916
Alignment:
Q  525 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 609  Q
    ||||||| | ||| ||||| || |||||| |||| |||||  ||||||||||||| ||||  |||||||||||||||||||||||    
T  51089000 aaattatatgttgaaaatgtaaatttttacttttatcttacaaataattacacaattttttattacaaagttacttattttagta 51088916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 577
Target Start/End: Original strand, 2392597 - 2392657
Alignment:
Q  517 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 577  Q
    ||||||||||| | ||| ||| ||||||||||||||| ||||||||| ||||||| |||||    
T  2392597 attagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactacac 2392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 533
Target Start/End: Complemental strand, 5324657 - 5324605
Alignment:
Q  481 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 533  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  5324657 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 5324605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 642
Target Start/End: Complemental strand, 34341518 - 34341398
Alignment:
Q  522 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgata 621  Q
    |||||||| |||| |  |||| |||| ||||| ||||||||||||||||||||||||| ||||   |||||| |||| ||||| || | ||||||| ||     
T  34341518 tagaaattttgttgtaaaaatacaagattttacttttgtcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatg 34341419  T
Q  622 cctcaacgacactagttagca 642  Q
     |||||  ||||| |||||||    
T  34341418 tctcaagaacactcgttagca 34341398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 576
Target Start/End: Original strand, 32906156 - 32906187
Alignment:
Q  545 aagtttttatttttgtcttagcaataattaca 576  Q
    ||||||||||||||||||||||||||||||||    
T  32906156 aagtttttatttttgtcttagcaataattaca 32906187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 620
Target Start/End: Original strand, 41259984 - 41260118
Alignment:
Q  486 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 585  Q
    ||||||| |||||| |||||||||  | |  |||| |||||| | ||| ||| |||| ||||| ||||||||| | ||| |||| ||||||| | ||||     
T  41259984 cagtgccctaagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttattttttttttatcaatgattacaccacttttc 41260083  T
Q  586 gttacaaagttacttattttagtattttaaccgat 620  Q
    | | |||| |||||||||||| || ||||||||||    
T  41260084 gatgcaaacttacttattttaatactttaaccgat 41260118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 579
Target Start/End: Complemental strand, 53650155 - 53650078
Alignment:
Q  503 tggttaaaaaatttattagtagaaattatgttttggaaatgcaag-tttttatttttgtcttagcaataattacacaa 579  Q
    |||||||  |||| ||||||||||||| ||||||| ||||  ||  |||||| ||||||||||||||||| |||||||    
T  53650155 tggttaaggaattcattagtagaaattttgttttgaaaatataaaatttttacttttgtcttagcaataaatacacaa 53650078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 503 - 615
Target Start/End: Original strand, 33027147 - 33027258
Alignment:
Q  503 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttat 602  Q
    ||||||| ||||| ||||||| ||||| ||||||| |||| |||  ||||||| || | |||| |||||||| ||   |||| | |||||| ||||||||    
T  33027147 tggttaagaaattcattagtaaaaattttgttttg-aaatacaaaattttattcttattttagaaataattatactgctttttgatacaaacttacttat 33027245  T
Q  603 tttagtattttaa 615  Q
    |||| ||||||||    
T  33027246 tttaatattttaa 33027258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 548 - 584
Target Start/End: Complemental strand, 42009726 - 42009690
Alignment:
Q  548 tttttatttttgtcttagcaataattacacaaatttt 584  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  42009726 tttttatttttgtcttagtaataattacacaactttt 42009690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 608
Target Start/End: Complemental strand, 2223788 - 2223669
Alignment:
Q  489 tgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagtt 588  Q
    ||||||||| |||||| ||||  ||| |||||||| ||||| ||||||  |||| ||| |||||| || |||||||  |||||||||| || |||| |||    
T  2223788 tgccttaagagtaatgattaaggaatctattagtaaaaattctgttttaaaaatacaaatttttacttctgtcttaataataattacataattttttgtt 2223689  T
Q  589 acaaagttacttattttagt 608  Q
     ||| |||||||||||||||    
T  2223688 gcaatgttacttattttagt 2223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 627
Target Start/End: Original strand, 23131454 - 23131564
Alignment:
Q  517 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 616  Q
    ||||||||||| | ||| ||| ||||  || |||||| |||||| |||||||||||||| ||| ||||  || |||| ||||||||||||||| ||||||    
T  23131454 attagtagaaactttgtcttgaaaatataaatttttacttttgttttagcaataattacgcaactttttattgcaaaattacttattttagtactttaac 23131553  T
Q  617 cgatacctcaa 627  Q
    | ||| |||||    
T  23131554 caataactcaa 23131564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 29694388 - 29694306
Alignment:
Q  535 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 617  Q
    |||||||| ||||||||||||||||||||| |||||||||||  | ||||   | |||| ||||||||||||||| |||||||    
T  29694388 ttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaaacttacttattttagtactttaacc 29694306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 616
Target Start/End: Original strand, 246547 - 246624
Alignment:
Q  539 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 616  Q
    |||| |||||||||| |||| ||| |||||||||||||| | |||| | | |||| ||||||||||||||| ||||||    
T  246547 aaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaac 246624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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