View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_20 (Length: 381)
Name: NF19787_low_20
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 356583 - 356903
Alignment:
| Q |
18 |
caaatagttcatgctggtaaaccaaggtcccatgaactcacatgtgttcctatgttgttgtttcaacagctgagttatgaaatcatgaactcgaggcaag |
117 |
Q |
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| T |
356583 |
caaatagttcatgctggtaaaccaaggtcccatgaactcacatgtgttcctatgttgttttttcaacagctgagttatgaaatcatgaactcgaggcaag |
356682 |
T |
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| Q |
118 |
ttccacaataatggtattatcatgccaaaaattggataatctgtaagaattgggtatttgcaacgtctccaacgatgaatttggaagacgatgcatagga |
217 |
Q |
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| T |
356683 |
ttccacaataatggtattatcatgccaaaaattggataatctgtaagaattgggtatttgcaacgtctccaacgatgaatttggaagacgatgcatagga |
356782 |
T |
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| Q |
218 |
agaagaagaagagtgcataaattattgatgtataactaagcatggctattgtaaattattgatgttgtttgatatgatttagtgtagtatatggttgtcc |
317 |
Q |
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| T |
356783 |
agaagaagaagagtgcataaattattgatgtataactaagcatggctattgtaaattattgatgttgtttgatatgatttagtgtagtatatggttgtcc |
356882 |
T |
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| Q |
318 |
tttatatagcattagcatgga |
338 |
Q |
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| T |
356883 |
tttatatagcattagcatgga |
356903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 347924 - 348130
Alignment:
| Q |
18 |
caaatagttcatgctggtaaaccaaggtcccatgaactcacatgtgttcctatgttgttgtttcaacagctgagttatgaaatcatgaactcgaggcaag |
117 |
Q |
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| T |
347924 |
caaatagttcatgttggtaaaccaaggtcccatgaactcacatgtgctcctatgttgttgtttcaatgcctcagttactaaatcatgaacttgccacaag |
348023 |
T |
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| Q |
118 |
ttccacaataatggtattatcatgccaaaaattggataatc-tgtaagaattgggtatttgcaacgtctccaacgatgaatttggaagacgatgcatagg |
216 |
Q |
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| T |
348024 |
ttccaaaagagtggtagtagcatgcccaaaaatggataatcttttaaaaattgggtatttgcaacttcttcgacgatgaatttggaagaagatgcatatc |
348123 |
T |
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| Q |
217 |
aagaaga |
223 |
Q |
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| T |
348124 |
aagaaga |
348130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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