View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_21 (Length: 380)
Name: NF19787_low_21
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 17743109 - 17742967
Alignment:
| Q |
15 |
gacaacaatttttcaatgactttttaatgtaaaatgtcgcatttaaat-catagcaattgattaattctccttttatattgctcttggattcaattaagg |
113 |
Q |
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| T |
17743109 |
gacaacaatttctcaacgaatttttaaagtaaaatgtcgcatttaaattcataacaattgattaattctccttttttattgctcttgaattcaactaagg |
17743010 |
T |
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| Q |
114 |
ccttcttaatgtttgtttttgtatttgaatttgaatgaagcaa |
156 |
Q |
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| T |
17743009 |
ccttcttaatgtttgcttttgtatttgaatttaaatgaagcaa |
17742967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 16675365 - 16675507
Alignment:
| Q |
15 |
gacaacaatttttcaatgactttttaatgtaaaatgtcgcatttaaat-catagcaattgattaattctccttttatattgctcttggattcaattaagg |
113 |
Q |
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| T |
16675365 |
gacaataatttctcaacgactttttaaagtaaaatgtcgcatttaaattcacaacaattgattaattctcccattttattgctcttgaattcaattaagg |
16675464 |
T |
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| Q |
114 |
ccttcttaatgtttgtttttgtatttgaatttgaatgaagcaa |
156 |
Q |
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| T |
16675465 |
ccttcttaatgtttgcttttgtatttgaatttgaatgaagcaa |
16675507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 17742382 - 17742276
Alignment:
| Q |
247 |
ataattttccatcctttctaaaggagtagctagggaaataccattttttgtcaattaacatataatcttttatgatcttgaaaaacatatcctgcccaaa |
346 |
Q |
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| T |
17742382 |
ataattttccatcctttttaaaggagtggctagggaaatactaattttcgtcaattaacatatcatcttttatgatcttgaaaaacatatcttgcccaaa |
17742283 |
T |
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| Q |
347 |
tctagag |
353 |
Q |
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||||||| |
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| T |
17742282 |
tctagag |
17742276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 16676245 - 16676315
Alignment:
| Q |
249 |
aattttccatcctttctaaaggagtagctagggaaataccattttttgtcaattaacatataatcttttat |
319 |
Q |
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| T |
16676245 |
aattttccatcctttctaaaggagtagctagggaaataccattttttgtcaattaacatataatcttttat |
16676315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 22038336 - 22038375
Alignment:
| Q |
104 |
tcaattaaggccttcttaatgtttgtttttgtatttgaat |
143 |
Q |
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| T |
22038336 |
tcaattaaggccttctcaatgattgtttttgtatttgaat |
22038375 |
T |
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