View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_22 (Length: 374)

Name: NF19787_low_22
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_22
NF19787_low_22
[»] chr3 (3 HSPs)
chr3 (18-363)||(42091810-42092156)
chr3 (306-361)||(54437805-54437860)
chr3 (305-361)||(21570366-21570422)
[»] chr6 (3 HSPs)
chr6 (306-362)||(32342599-32342655)
chr6 (310-352)||(20206485-20206527)
chr6 (310-352)||(22100508-22100550)
[»] chr4 (3 HSPs)
chr4 (217-361)||(25062396-25062544)
chr4 (306-346)||(20512704-20512744)
chr4 (306-350)||(54000079-54000123)
[»] chr8 (3 HSPs)
chr8 (217-347)||(7405428-7405556)
chr8 (217-362)||(32166655-32166799)
chr8 (215-271)||(29093611-29093668)
[»] chr5 (7 HSPs)
chr5 (306-358)||(14258902-14258954)
chr5 (306-346)||(973110-973150)
chr5 (307-350)||(37077760-37077803)
chr5 (310-352)||(2243346-2243388)
chr5 (306-352)||(7215326-7215372)
chr5 (317-361)||(972839-972883)
chr5 (327-363)||(39730325-39730361)
[»] chr1 (7 HSPs)
chr1 (310-352)||(35956986-35957028)
chr1 (306-352)||(42819620-42819666)
chr1 (310-352)||(52432836-52432878)
chr1 (305-361)||(34601630-34601686)
chr1 (306-362)||(46080970-46081026)
chr1 (306-363)||(10775162-10775219)
chr1 (306-346)||(2534295-2534334)
[»] chr7 (5 HSPs)
chr7 (215-291)||(31152824-31152901)
chr7 (215-291)||(31171385-31171462)
chr7 (306-340)||(27651382-27651416)
chr7 (306-363)||(8900669-8900726)
chr7 (306-350)||(34891532-34891576)
[»] chr2 (6 HSPs)
chr2 (305-362)||(16576246-16576303)
chr2 (306-359)||(28282823-28282876)
chr2 (306-350)||(9931278-9931322)
chr2 (215-280)||(28282725-28282791)
chr2 (306-351)||(16576416-16576461)
chr2 (305-361)||(2248957-2249013)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 42092156 - 42091810
Alignment:
Q  18 tttttgaattagcttttcttaaaagatttcaacaactcaaatagctctttatcaactcatttaacttcatttgaattcaattgagagcttgaagttaaaa 117  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42092156 tttttgaattagcttttcttaaaaggtttcgacagctcaaatagctctttatcaactcatttaacttcatttgaatccaattgagagcttgaagttaaaa 42092057  T
Q  118 cataaagaatttgtgctaaatnnnnnnngagataatggaagagataaatatgcaatagttcacatccaaggtgaatgctacatctagtcctcctacatcc 217  Q
    |||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42092056 cataaataatttgtgctaaataaataaagagataatggaagagataaatatgcaatagttcacatccaaggtgaatgctacatctagtcctcctacatcc 42091957  T
Q  218 atctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaagggatattgtatgtctcgccaatgcttttttcttac 316  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||    
T  42091956 atctctttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttac 42091857  T
Q  317 aattaattatcattttcatctcaaaaacatcaaactctttcatctct 363  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  42091856 aattaattatcattttcatctcaaaaacatcaaactttttcatctct 42091810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 54437805 - 54437860
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 361  Q
    |||||||||||||| | ||| |||||| |||||||||||||||||||  |||||||    
T  54437805 ttttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 21570366 - 21570422
Alignment:
Q  305 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 361  Q
    |||| ||||||||||| ||||  ||||||||| ||| ||||||||||| ||||||||    
T  21570366 ctttattcttacaattgattactattttcatcacaagaacatcaaactttttcatct 21570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 32342599 - 32342655
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 362  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  32342599 ttttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctc 32342655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 20206527 - 20206485
Alignment:
Q  310 ttcttacaattaattatcattttcatctcaaaaacatcaaact 352  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaact 20206485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 22100550 - 22100508
Alignment:
Q  310 ttcttacaattaattatcattttcatctcaaaaacatcaaact 352  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaact 22100508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 361
Target Start/End: Original strand, 25062396 - 25062544
Alignment:
Q  217 catctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaagggatattgtatgtctcgccaat---gcttttttc 312  Q
    |||||| || ||||||||||||| || ||||||| |||| ||||||||||||| |||||| |||||| ||| |||| |  || |||||   | |||||||    
T  25062396 catctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatcaaggaataatgtaggcttcaccaatttggtttttttc 25062495  T
Q  313 ttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 361  Q
    ||||||| ||||| | |||||||||||| || ||||||||  |||||||    
T  25062496 ttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 20512744 - 20512704
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacat 346  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  20512744 ttttttcttacaattagttatctttttcatctcaaaaacat 20512704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 54000123 - 54000079
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 350  Q
    ||||||||||| || ||||| |||||||||||||| |||||||||    
T  54000123 ttttttcttactatcaattaccattttcatctcaagaacatcaaa 54000079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 347
Target Start/End: Complemental strand, 7405556 - 7405428
Alignment:
Q  217 catctctttcgttccataatcaagtcttacttgtgattaggg-taaattacccccaattcgtcaagggatattgtatgtctcgccaa-tgcttttttctt 314  Q
    |||||| |||||||||||||| |||||||    ||||||||| ||||||| |||||| || ||||||| || |||||| | | |||| |  |||||||||    
T  7405556 catctcgttcgttccataatcgagtctta----tgattaggggtaaattatccccaactcatcaaggggtaatgtatgccccaccaaattgttttttctt 7405461  T
Q  315 acaattaattatcattttcatctcaaaaacatc 347  Q
    |||||||||| |||||||||| |||| ||||||    
T  7405460 acaattaattgtcattttcatttcaagaacatc 7405428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 32166799 - 32166655
Alignment:
Q  217 catctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgtatgtctcgccaatgcttttttctta 315  Q
    |||||||||||||||| |||| | || ||||||| ||||| |||||||||| |||||||| |||| | | | |||||| |||  | ||  ||||| ||||    
T  32166799 catctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatg-ctcatcgatagttttt-ctta 32166702  T
Q  316 caattaattatcattttcatctcaaaaacatcaaactctttcatctc 362  Q
    | || |||||||||||||||||||| |||||||||||  ||||||||    
T  32166701 ctatcaattatcattttcatctcaagaacatcaaacttcttcatctc 32166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 29093611 - 29093668
Alignment:
Q  215 tccatctctttcgttccataatcaagtcttacttgtgatt-agggtaaattaccccca 271  Q
    ||||||||||||||||||||||||| || ||||||  ||| |||||||||||||||||    
T  29093611 tccatctctttcgttccataatcaaatcatacttggtattgagggtaaattaccccca 29093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 14258954 - 14258902
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttca 358  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||| |||||    
T  14258954 ttttttattataattatttatcattttcatctcaaaaacatcaaactttttca 14258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 973110 - 973150
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacat 346  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  973110 ttttttcttacaattagttatcatttttatctcaaaaacat 973150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 37077760 - 37077803
Alignment:
Q  307 tttttcttacaattaattatcattttcatctcaaaaacatcaaa 350  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaa 37077803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 2243388 - 2243346
Alignment:
Q  310 ttcttacaattaattatcattttcatctcaaaaacatcaaact 352  Q
    |||||||||||| ||| |||||||||||||| |||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaact 2243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 7215372 - 7215326
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaact 352  Q
    |||||||||||||| || || |||||||||||||| |||||||||||    
T  7215372 ttttttcttacaatcaactaccattttcatctcaagaacatcaaact 7215326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 972839 - 972883
Alignment:
Q  317 aattaattatcattttcatctcaaaaacatcaaactctttcatct 361  Q
    ||||| |||||||||||||||||| |||||||||||  |||||||    
T  972839 aattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 39730361 - 39730325
Alignment:
Q  327 cattttcatctcaaaaacatcaaactctttcatctct 363  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctct 39730325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 35956986 - 35957028
Alignment:
Q  310 ttcttacaattaattatcattttcatctcaaaaacatcaaact 352  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  35956986 ttcttacaattaattaccatttttatctcaaaaacatcaaact 35957028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 42819620 - 42819666
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaact 352  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||    
T  42819620 ttttttcttacaatcaattatcattttcatctcaagaacataaaact 42819666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 52432836 - 52432878
Alignment:
Q  310 ttcttacaattaattatcattttcatctcaaaaacatcaaact 352  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaact 52432878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 34601686 - 34601630
Alignment:
Q  305 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 361  Q
    |||| ||||||| |||| |||| ||||||||||||||||||||||||  ||||||||    
T  34601686 ctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatct 34601630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 46080970 - 46081026
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 362  Q
    |||||||||||||| ||||| |||||||||||||| ||||| |||||  ||||||||    
T  46080970 ttttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctc 46081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 10775162 - 10775219
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctct 363  Q
    |||||||||| ||| ||||| ||||||||||| || |||||||||||  |||||||||    
T  10775162 ttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctct 10775219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 2534334 - 2534295
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacat 346  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  2534334 ttttttcgtacaattaattatcatttt-atctcaaaaacat 2534295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 31152901 - 31152824
Alignment:
Q  215 tccatctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgta 291  Q
    ||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||||||||||| ||||| |||| ||||    
T  31152901 tccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgta 31152824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 31171462 - 31171385
Alignment:
Q  215 tccatctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgta 291  Q
    ||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||||||||||| ||||| |||| ||||    
T  31171462 tccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgta 31171385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 27651416 - 27651382
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaa 340  Q
    |||||||||||||| ||||||||||||||||||||    
T  27651416 ttttttcttacaatcaattatcattttcatctcaa 27651382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 8900726 - 8900669
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctct 363  Q
    |||||||||||||| ||||| |||||| ||||||| |||| ||||||  |||||||||    
T  8900726 ttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctct 8900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 34891532 - 34891576
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 350  Q
    ||||||||||| |||| |||||||||| ||||||| |||||||||    
T  34891532 ttttttcttactattagttatcattttgatctcaagaacatcaaa 34891576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 16576246 - 16576303
Alignment:
Q  305 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 362  Q
    ||||||||||||||| ||||| ||||||| |||||| |||||||||||  ||||||||    
T  16576246 cttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctc 16576303  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 28282823 - 28282876
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcat 359  Q
    |||||||||||||| |||||||||||||||||| | || |||||||| ||||||    
T  28282823 ttttttcttacaatcaattatcattttcatctccataatatcaaactttttcat 28282876  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 9931278 - 9931322
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 350  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||    
T  9931278 tttttttttacaatttattatcattttcatcttaaaaacatcaaa 9931322  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 28282725 - 28282791
Alignment:
Q  215 tccatctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaa 280  Q
    |||||||| |||||||||||||||| | |||||||| |||| ||||||||||||  |||||| ||||    
T  28282725 tccatctcattcgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 16576416 - 16576461
Alignment:
Q  306 ttttttcttacaattaattatcattttcatctcaaaaacatcaaac 351  Q
    |||||||||||||| | ||||||||||||| ||||||||| |||||    
T  16576416 ttttttcttacaatcatttatcattttcatttcaaaaacaacaaac 16576461  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 2249013 - 2248957
Alignment:
Q  305 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 361  Q
    |||| |||||| ||||| ||| |||||||||||||||||||| |||||  |||||||    
T  2249013 ctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatct 2248957  T

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