View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_29 (Length: 335)
Name: NF19787_low_29
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 52725262 - 52725562
Alignment:
| Q |
12 |
agatgaatacaagagggatgcttacagactcgttcgatgtctgtctttctttcttccttcctttaacactctttttt-atatttttactgttcatttaat |
110 |
Q |
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| T |
52725262 |
agatgaatacaagagggatgcttacagactcgttcgatgtctgtctttctt--------cctttaacactctttttttatatttttactgttcatttaat |
52725353 |
T |
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| Q |
111 |
caaggatcaatttagttcctaaaca--ttcattctttctccaatttactttcaactctcatgagatttactaactaatgtattgttggtaaatatactct |
208 |
Q |
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| T |
52725354 |
tcatgttca-tttaatcaatgatcaatttcattctttctccaatttactttcaactctcatgagatttactaactaatgtattgttggtaaatataccct |
52725452 |
T |
|
| Q |
209 |
tctcactcatgatttatctactgttttctcatcctttaattct-tacttgcaacttattcccttcatttccagcaattatcgacagtagaatggccgcaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52725453 |
tctcactcatgatttatctactgttttctcatcctttaattctctacttgcaacttattcccttcatttccagcaattattgacagtagaatggccgcaa |
52725552 |
T |
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| Q |
308 |
aagacatatc |
317 |
Q |
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|||||||||| |
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| T |
52725553 |
aagacatatc |
52725562 |
T |
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