View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19787_low_3 (Length: 672)
Name: NF19787_low_3
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 132 - 654
Target Start/End: Original strand, 20426307 - 20426828
Alignment:
| Q |
132 |
caaaaaggacatatttcatttaataatattcttaatatatttttaattcaaataaattgaaaattaaagttttgtctagaaaatgannnnnnnnnnaaag |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
20426307 |
caaaaaggacatatttcatttaataatattcttaatatatttttaattcaaataaattgaaaattaaagttttgtctagaaaatgattttttttg-aaag |
20426405 |
T |
|
| Q |
232 |
agtctacaaaatgatttacttttgtcctatttaatatttaaactttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgtcc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20426406 |
agtctacaaaatgatttacttttgtcctatttaatatttaaactttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgtcc |
20426505 |
T |
|
| Q |
332 |
gttctttgcgtcttattattgtttgcctaagaattatccatgacgattcatctttgctttgaatgtgacaagaccttcaaaagtgtttgtgatttgaatg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20426506 |
tgtctttgcgtcttattattgtttgcctaagaattatccatgacgattcatctttgctttgaatgtgacaggaccttcaaaagtgtttgtgatttgaatg |
20426605 |
T |
|
| Q |
432 |
cccatcgaatgatggaatgtgaaattgacacacgctgcaataaatgtggtcaattatgctcatcttcgatttcatgtgctctgaagatctgtgaaccacc |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
20426606 |
cccatcgaatgatggaatgtgaaattgacacacgctgcaataaatgtggtcaattatgctcatcttcgatttcatgtgctctgaagatatgtgaaccacc |
20426705 |
T |
|
| Q |
532 |
aaaaccgccaacagattttgtgtgtcttttttgtggtagtgtgtttcctacttcggaagaatgcatcaaccacatgactaatcttcactgattttaaaag |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20426706 |
aaaaccgccaacagattttgtgtgtcttttttgtggtagtgtatttcctacttcggaagaatgtatcaaccacatgactaatcttcactgattttaaaag |
20426805 |
T |
|
| Q |
632 |
aatgtatgaaccacatggtttat |
654 |
Q |
| |
|
|||||| |||||||||| ||||| |
|
|
| T |
20426806 |
aatgtacgaaccacatgctttat |
20426828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 276 - 657
Target Start/End: Original strand, 20432010 - 20432396
Alignment:
| Q |
276 |
ttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgtccgttctttgcgtcttattattgtttgcctaagaattatccatgac |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || |||| ||||| |||| ||||| ||||||||||||||||| |
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|
| T |
20432010 |
ttttgacgatatatttgctatatatttgatacaaattgtatgccggcaaatcgtccggtccttgcttcttagtatt-tttgcttaagaattatccatgac |
20432108 |
T |
|
| Q |
376 |
gattcatctttgctttgaatgtgacaagaccttcaaaagtgtttgtgatttgaatgcccatcgaatgatggaatgtgaaattgacacacgctgcaataaa |
475 |
Q |
| |
|
||||||| ||||||||||||| | ||||||| |||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
20432109 |
gattcatgcctgctttgaatgtggtaggaccttcggaagtgtctgtgctttgaatgcccatcgaatgatgcaatgtgaaattgacacacgttgcaatcaa |
20432208 |
T |
|
| Q |
476 |
tgtggtcaattatgctcatcttcgatttcatgtgc------tctgaagatctgtgaaccaccaaaaccgccaacagattttgtgtgtcttttttgtggta |
569 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| | ||||| ||||||| ||||||||||||||| | |||| |||| | | |||||||| |
|
|
| T |
20432209 |
tgtggtcaactatgctcatctatgatttcttgtgctaatcataagaagacctgtgaagcaccaaaaccgccaaaatatttgaagtgtatctgttgtggta |
20432308 |
T |
|
| Q |
570 |
gtgtgtttcctacttcggaagaatgcatcaaccacatgactaatcttcactgattttaaaagaatgtatgaaccacatggtttatgtt |
657 |
Q |
| |
|
| || ||| |||||||| || |||| |||||||||||| |||||| ||| ||||||| |||||||||| |||||||||| |||||||| |
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|
| T |
20432309 |
gggtattttctacttcgaaataatgtatcaaccacatggctaatcgtcagtgattttgaaagaatgtacgaaccacatgctttatgtt |
20432396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20426176 - 20426228
Alignment:
| Q |
1 |
attcacaaacaaattatgaatttactttcaatactaatacttttgaatcgaac |
53 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
20426176 |
attcacaaacaaattctgaatttactttcaatcctaatacttttgaattgaac |
20426228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 20431768 - 20431822
Alignment:
| Q |
276 |
ttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgtc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
20431768 |
ttttgacgatatatttgctatatatttgatacaaattgtatgccggaaaatcgtc |
20431822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 20431888 - 20431942
Alignment:
| Q |
276 |
ttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgtc |
330 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
20431888 |
ttttgacggtatatttgctatatatttgatacaaattgtatgccggcaaatcgtc |
20431942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 20431651 - 20431736
Alignment:
| Q |
133 |
aaaaaggacatatttcatttaataatatt--ctta-atatatttttaattcaaataaatt-gaaaattaaagttttgtctagaaaat |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||| | |||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
20431651 |
aaaaaggacatatttcatttaat-atattgccttatatatattttcagttcaaataaattaaaaaatttaaattttgtctagaaaat |
20431736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 132 - 657
Target Start/End: Original strand, 5319055 - 5319582
Alignment:
| Q |
132 |
caaaaaggacatatttcatttaataatattcttaatatatttttaattcaaataaattgaaaattaaagttttgtctagaaaatgannnnnnnnnn--aa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
5319055 |
caaaaaggacatatttcatttaataatattcttaatatatttttaattcaaataaattgaaaattaaagctttgtctagaaaatgatttttttttttgaa |
5319154 |
T |
|
| Q |
230 |
agagtctacaaaatgatttacttttgtcctatttaatatttaaactttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5319155 |
agagtctacaaaatgatttacttttgtcctatttaatatttaaactttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgt |
5319254 |
T |
|
| Q |
330 |
ccgttctttgcgtcttattattgtttgcctaagaattatccatgacgattcatctttgctttgaatgtgacaagaccttcaaaagtgtttgtgatttgaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5319255 |
ccgttctttgcgtcttattattgtttgcctaagaattatccatgacgattcatctttgctttgaatgtgacaggaccttcaaaagtgtttgtgatttgaa |
5319354 |
T |
|
| Q |
430 |
tgcccatcgaatgatggaatgtgaaattgacacacgctgcaataaatgtggtcaattatgctcatcttcgatttcatgtgctctgaagatctgtgaacca |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5319355 |
tgcccatcgaatgatggaatgtgaaattgacacacgctgcaataaatgtggtcaattatactcatcttcgatttcatgtgctctgaagatctgtgaacca |
5319454 |
T |
|
| Q |
530 |
ccaaaaccgccaacagattttgtgtgtcttttttgtggtagtgtgtttcctacttcggaagaatgcatcaaccacatgactaatcttcactgattttaaa |
629 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5319455 |
ccaaaaccgccaatagattttgtgtgtcttttttgtggtagtgtatttcctacttcggaagaatgtatcaaccacatgactaatcttcactgattttaaa |
5319554 |
T |
|
| Q |
630 |
agaatgtatgaaccacatggtttatgtt |
657 |
Q |
| |
|
|||||||| |||||||||| |||||||| |
|
|
| T |
5319555 |
agaatgtacgaaccacatgctttatgtt |
5319582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 276 - 657
Target Start/End: Original strand, 5327921 - 5328307
Alignment:
| Q |
276 |
ttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgtccgttctttgcgtcttattattgtttgcctaagaattatccatgac |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| || |||| ||||| |||| ||| | ||||||||||||||||| |
|
|
| T |
5327921 |
ttttgacgatatatttgctatatatttgatacaaattgtatgccgggaaatcgtcctatccttgcttcttagtatttttt-cttaagaattatccatgac |
5328019 |
T |
|
| Q |
376 |
gattcatctttgctttgaatgtgacaagaccttcaaaagtgtttgtgatttgaatgcccatcgaatgatggaatgtgaaattgacacacgctgcaataaa |
475 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
5328020 |
gattcatgtttgctttgaatgtggtaggaccttcgaaagtgtctgtgctttgaatgcccatcgaatgatgcaatgtgaaattgacacacgttgcaatcaa |
5328119 |
T |
|
| Q |
476 |
tgtggtcaattatgctcatcttcgatttcatgtgc------tctgaagatctgtgaaccaccaaaaccgccaacagattttgtgtgtcttttttgtggta |
569 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| | ||||| ||||||| |||||||| |||||| | |||| | |||| | | |||||||| |
|
|
| T |
5328120 |
tgtggtcaactatgctcatctatgatttcttgtgctaatcataagaagacctgtgaagcaccaaaaacgccaaaatatttggagtgtatatgttgtggta |
5328219 |
T |
|
| Q |
570 |
gtgtgtttcctacttcggaagaatgcatcaaccacatgactaatcttcactgattttaaaagaatgtatgaaccacatggtttatgtt |
657 |
Q |
| |
|
| || |||||||||||| || |||| |||||||||||| |||||| ||| ||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
5328220 |
gggtatttcctacttcgaaataatgtatcaaccacatggctaatcgtcaatgattttgaaagaatgtacgaaccacatgctttatgtt |
5328307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5318924 - 5318976
Alignment:
| Q |
1 |
attcacaaacaaattatgaatttactttcaatactaatacttttgaatcgaac |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5318924 |
attcacaaacaaattatgaatttactttcaatactaatacatttgaatcgaac |
5318976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 5327798 - 5327852
Alignment:
| Q |
276 |
ttttgacgatatatttgctatatatttgatggaaattatatgccggcaaatcgtc |
330 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5327798 |
ttttgacggtatatttgctatatatttgatacaaattgtatgccggcaaatcgtc |
5327852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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