View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_35 (Length: 317)

Name: NF19787_low_35
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_35
NF19787_low_35
[»] chr1 (3 HSPs)
chr1 (20-312)||(12609731-12610023)
chr1 (18-312)||(15885844-15886138)
chr1 (23-314)||(12636830-12637121)
[»] scaffold0059 (1 HSPs)
scaffold0059 (21-316)||(61980-62275)
[»] chr3 (15 HSPs)
chr3 (60-316)||(23036036-23036292)
chr3 (61-316)||(23148625-23148880)
chr3 (61-316)||(23145787-23146042)
chr3 (26-316)||(22971783-22972073)
chr3 (62-316)||(23024140-23024394)
chr3 (37-316)||(23016905-23017184)
chr3 (60-316)||(22946270-22946526)
chr3 (98-316)||(23038945-23039163)
chr3 (59-306)||(23139911-23140158)
chr3 (75-226)||(22941542-22941693)
chr3 (61-264)||(23032581-23032784)
chr3 (94-239)||(22916829-22916974)
chr3 (98-274)||(22986181-22986357)
chr3 (114-226)||(22831755-22831867)
chr3 (114-239)||(22932133-22932258)
[»] chr6 (1 HSPs)
chr6 (43-316)||(21779662-21779935)
[»] scaffold0554 (1 HSPs)
scaffold0554 (38-316)||(6632-6910)
[»] chr2 (1 HSPs)
chr2 (168-242)||(2433634-2433708)
[»] chr5 (6 HSPs)
chr5 (166-242)||(7154485-7154561)
chr5 (167-316)||(31187742-31187891)
chr5 (167-316)||(31225887-31226036)
chr5 (167-242)||(31177679-31177754)
chr5 (95-129)||(41317195-41317229)
chr5 (96-129)||(41329236-41329269)
[»] chr8 (1 HSPs)
chr8 (114-226)||(5594198-5594310)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 12609731 - 12610023
Alignment:
Q  20 gtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaat 119  Q
    ||||||||||| |||||||||||||||||||||| |||  |||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||    
T  12609731 gtaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaat 12609830  T
Q  120 caaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactc 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  | |||||||||||||||||||| || || || |||||||||||    
T  12609831 caaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactc 12609930  T
Q  220 aaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaat 312  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||    
T  12609931 aaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttggatctcttccaat 12610023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 15886138 - 15885844
Alignment:
Q  18 cagtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctcca 117  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||| |||||||| || ||| |||||||| |||||| ||||||||||||    
T  15886138 cagtaggtatcaagtacaagtcatcttttcttttgacggtcgctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcgggaagcctcca 15886039  T
Q  118 atcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtac 217  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |  || ||||||||||||    
T  15886038 atcaaagtgatacaacaacaatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaaggaatgtac 15885939  T
Q  218 tcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaat 312  Q
    ||||||||| ||||||| || |||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  15885938 tcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatctcttccaat 15885844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 12636830 - 12637121
Alignment:
Q  23 ggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaa 122  Q
    ||||||||||||||||||  ||||||||| |   || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12636830 ggtatcaagtacaagtcactttttcttttaacattagccccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaa 12636929  T
Q  123 agtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaa 222  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || || |||||||||||||||||    
T  12636930 agtgatataacaacaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa 12637029  T
Q  223 attagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattg 314  Q
    |||| | |||||||| |||| ||||||||| ||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||| |||||||    
T  12637030 attatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattg 12637121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 61980 - 62275
Alignment:
Q  21 taggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatc 120  Q
    ||||||||||||||||||||||||||||||| |  || |||||||||| ||||||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  61980 taggtatcaagtacaagtcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatc 62079  T
Q  121 aaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactca 220  Q
    |||||||||||||| || || |||||||| ||||| | | |||||||||||| |  ||||||| ||||||||| |||| || || ||||||||||||||     
T  62080 aaagtgatacaacaacattgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctttttccagcaccaaaaggaatgtactcg 62179  T
Q  221 aaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    |||||| |||| ||||| |||| ||| ||||| ||||||||||| |||||||||||||| ||||| ||||| ||| ||| ||||||||| ||||||    
T  62180 aaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatctcttccgattgcc 62275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 60 - 316
Target Start/End: Original strand, 23036036 - 23036292
Alignment:
Q  60 ctccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatt 159  Q
    |||||||||  |||||||||||||| ||  ||| ||| |||||| | |||||| |||| ||||| |||||||||| ||  | ||| ||||  |||| |||    
T  23036036 ctccaaattcgtcagtcatgtccaattcttcacttttgattccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatt 23036135  T
Q  160 tatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaat 259  Q
    | |||||||||||||  | ||||| ||||||||||||||||| || ||||||||||||||||| ||| |||||||||| |||| || |||  ||||||||    
T  23036136 tctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaat 23036235  T
Q  260 ctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    ||||| |||||||| ||||| ||||||||||| || |||| ||||||| ||||||||    
T  23036236 ctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcc 23036292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 61 - 316
Target Start/End: Original strand, 23148625 - 23148880
Alignment:
Q  61 tccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacattt 160  Q
    |||||||| ||||||||| ||||  ||  ||||| | |||||| |||||||| |||| ||||| |||||||||| || ||  || |||| ||||| ||||    
T  23148625 tccaaattcctcagtcatatccatttcttcacctgttattccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatattt 23148724  T
Q  161 atcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatc 260  Q
     ||||||||||| |  | ||||| ||||||||||||||||| || |||||||||||||| || ||| ||||||| || |||| |  |||  | |||||||    
T  23148725 ctcaaaccaaatatgctccctgggcatattcttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatc 23148824  T
Q  261 tctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    |||| |||||||||||||| ||||||||||| || |||||||||||| ||||||||    
T  23148825 tctctggataaaacctctctggttcagtccagtagtttgaatctcttgcaattgcc 23148880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 316
Target Start/End: Original strand, 23145787 - 23146042
Alignment:
Q  61 tccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacattt 160  Q
    |||||||| ||||||||| ||||  ||  ||||| | |||||| | |||||| |||| ||||| |||||||| | || || |||  ||| ||||| ||||    
T  23145787 tccaaattcctcagtcatatccatttcttcacctgttattccactaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatattt 23145886  T
Q  161 atcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatc 260  Q
     |||||||||||||  | |||||||||||||||||||| || || ||||||||||||||||| ||| ||||||| || |||| |  |||  |||||||||    
T  23145887 gtcaaaccaaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatc 23145986  T
Q  261 tctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    |||| |||||||||||||| ||||||||||| || |||| ||||||| ||| ||||    
T  23145987 tctctggataaaacctctctggttcagtccagtagtttggatctcttgcaactgcc 23146042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 316
Target Start/End: Original strand, 22971783 - 22972073
Alignment:
Q  26 atcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagt 125  Q
    ||||| |||| ||||||||||||| | |  | | |||||||| |||||||||| ||||||||| ||| ||||||||||   |||||| ||||||||||||    
T  22971783 atcaaatacatgtcatcttttcttataacagaagctccaaatagctcagtcatatccaaatcctcacatttcattccaccaggaagcttccaatcaaagt 22971882  T
Q  126 gatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaatt 225  Q
    || |||| |  || | ||||| ||  |||||||||  || |||| |  | ||||||||||| ||||||||||| || || || |||||||||||||||||    
T  22971883 gagacaataagaaagcaagtgtcagttcaacatttgccataccatagttaatgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatt 22971982  T
Q  226 agtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
     || |||||| |||||| ||| ||| | || ||||| || ||||||||| | || || ||||||||||| |||| ||| ||||||||||||    
T  22971983 tgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcc 22972073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 316
Target Start/End: Original strand, 23024140 - 23024394
Alignment:
Q  62 ccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacattta 161  Q
    ||||||| ||||||||||||||| ||  ||| ||| |||||||| |||||| |||||||||| || ||||||| |  || ||| || | ||||||| ||     
T  23024140 ccaaatttctcagtcatgtccaattcttcacttttgattccattaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttc 23024239  T
Q  162 tcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatct 261  Q
     |||||||||| |  | |||||||||||||||| ||| || || |||||||| |||||||| ||| ||||||| || |||| |   ||| ||||||||||    
T  23024240 gcaaaccaaatatgctccctggacatattcttcgtcccgcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatct 23024339  T
Q  262 ctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    ||| |||||||||||||| ||||| ||||| || |||| ||||||| ||||||||    
T  23024340 ctctggataaaacctctctggttcggtccagtaatttggatctcttgcaattgcc 23024394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 316
Target Start/End: Original strand, 23016905 - 23017184
Alignment:
Q  37 gtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatc 136  Q
    ||||||||||||  | || || |||||||||||||||||||||||||  ||  ||| ||| ||||||  ||||||| |||| ||||| |||||||||| |    
T  23016905 gtcatcttttctcctcattgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaac 23017004  T
Q  137 aatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgt 236  Q
    |  | ||| ||||||||||||||| ||||||| |||||  | || || ||||||||||||||  | || ||||||||||| || || ||| ||||||| |    
T  23017005 atcgcaagggccaactcaacatttctcaaaccgaatgtactcccagggcatattcttcttccaccaccaaaaggaatgtattcgaagttactccctttat 23017104  T
Q  237 aatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    | |||| |  | |  | ||||||||||| ||||||||| |||| ||||||||||| || |||| ||||||| | ||||||    
T  23017105 agtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcc 23017184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 316
Target Start/End: Original strand, 22946270 - 22946526
Alignment:
Q  60 ctccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatt 159  Q
    |||||||| |||||||||||||||||||| ||  ||||||||||   |||||  |||||||||||||  |||| | ||| | ||||| || |||||||||    
T  22946270 ctccaaatagctcagtcatgtccaaatcctcatttttcattccaccaggaagtttccaatcaaagtggcacaataacaaagcaagtgtcagctcaacatt 22946369  T
Q  160 tatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaat 259  Q
    |  || |||  |  | ||||| ||||| ||||| |||||||| || || ||||||||||||||||| || |||||| |||||| ||| ||| | || |||    
T  22946370 tgccataccgtagttgatgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaat 22946469  T
Q  260 ctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    || || ||||||||| | || || ||||||||||| |||| ||| ||||||||||||    
T  22946470 ctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcc 22946526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 23038945 - 23039163
Alignment:
Q  98 attccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttc 197  Q
    |||||| | |||||| |||| ||||| |||||||||| || || ||| |||| ||||| | || |||||||||||||  | ||||| |||||||||||||    
T  23038945 attccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttcttc 23039044  T
Q  198 cggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactt 297  Q
    |||| || ||||||||||||||| ||||| | ||||| || ||||  | |||  | | ||||||||| |||||||| ||||| || |||||||| || ||    
T  23039045 cggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatt 23039144  T
Q  298 tgaatctcttccaattgcc 316  Q
    || ||||||| ||||||||    
T  23039145 tggatctcttgcaattgcc 23039163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 306
Target Start/End: Original strand, 23139911 - 23140158
Alignment:
Q  59 actccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacat 158  Q
    |||||||||| ||| ||||| ||||| ||  ||| | | |||||| | |||||| |||||||||| | | ||||||    || ||| | |||||||||||    
T  23139911 actccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacat 23140010  T
Q  159 ttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaa 258  Q
    || ||||||||||| |  | ||||| |||||||||| ||| || || ||||||||||||||||||| | ||||||| || |||| || | | || |||||    
T  23140011 ttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaa 23140110  T
Q  259 tctctccggataaaacctctcaggttcagtccaatactttgaatctct 306  Q
    |||||| ||||||||  |||| ||||||||||| || |||| ||||||    
T  23140111 tctctctggataaaatttctctggttcagtccagtagtttggatctct 23140158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 22941693 - 22941542
Alignment:
Q  75 tcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgt 174  Q
    |||||||||||||  ||  ||||||  ||||||||||  |||||||||||||||||| || ||||| |||||   |||||||||| | ||||||||||||    
T  22941693 tcatgtccaaatcttcatttttcatctcattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgt 22941594  T
Q  175 tatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaatta 226  Q
    ||  || ||||| ||||||||||| || || || |||||| |||||||||||    
T  22941593 tactcccggacacattcttcttccagcaccaaatggaatgaactcaaaatta 22941542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 264
Target Start/End: Original strand, 23032581 - 23032784
Alignment:
Q  61 tccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacattt 160  Q
    |||||||| |||||||||||| |  ||  ||| | | |||||||  |||||| |||| ||||| |||||||||| ||  |  || |||| ||||| ||||    
T  23032581 tccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcgagggccagctcaatattt 23032680  T
Q  161 atcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatc 260  Q
     |||||||||||||  | ||||| ||||||||||||||||| || || |||||||||||||||||| | ||||| || |||| || |||  |||||||||    
T  23032681 ctcaaaccaaatgtactccctgggcatattcttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatc 23032780  T
Q  261 tctc 264  Q
    ||||    
T  23032781 tctc 23032784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 22916974 - 22916829
Alignment:
Q  94 tttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattctt 193  Q
    ||||||| ||||||||||  |||||||||||||||||| || ||||| |||||  ||||||| ||| | ||| |||||||| |  |||||||| ||||||    
T  22916974 tttcattgcattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgaaaactcaatattgaccaatccaaatgtgacccctggacacattctt 22916875  T
Q  194 cttccggcgccgaaaggaatgtactcaaaattagtccctttgtaat 239  Q
    || ||   ||| || |||||| ||||||||||| | ||||||||||    
T  22916874 ctgccactgccaaacggaatgaactcaaaattattacctttgtaat 22916829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 274
Target Start/End: Original strand, 22986181 - 22986357
Alignment:
Q  98 attccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttc 197  Q
    ||||||||||||||  |||||||||| |||||||| || | || |||  |   ||||||||||  || |||| |  | ||||| ||||| ||||| ||||    
T  22986181 attccattgggaagtttccaatcaaaatgatacaatatgagtgcaaggacttgctcaacatttgccataccataattcatgccaggacaaattctccttc 22986280  T
Q  198 cggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaac 274  Q
    | || || || |||||||||||||||||||| |||||| |||||| ||| ||| | || || ||||| |||||||||    
T  22986281 cagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaac 22986357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 22831755 - 22831867
Alignment:
Q  114 tccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgtta-tgcctggacatattcttcttccggcgccgaaaggaa 212  Q
    |||||||||||||||||| || ||||| |||||   |||||||||| | |||||||||||| | |||| ||| | |||||||| || || || |||||||    
T  22831755 tccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccagcaccaaaaggaa 22831853  T
Q  213 tgtactcaaaatta 226  Q
    || |||||||||||    
T  22831854 tgaactcaaaatta 22831867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 22932133 - 22932258
Alignment:
Q  114 tccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaat 213  Q
    ||||||||||||| |||| || ||||| |||||  ||||||||| | | ||| |||||||| |  |||||||| |||||||| ||   ||| || |||||    
T  22932133 tccaatcaaagtggtacatcaacaatgcaagtgaaaactcaacactgaccaatccaaatgtaacccctggacacattcttctgccactgccaaacggaat 22932232  T
Q  214 gtactcaaaattagtccctttgtaat 239  Q
    | ||||||||||| | ||||||||||    
T  22932233 gaactcaaaattattacctttgtaat 22932258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 316
Target Start/End: Original strand, 21779662 - 21779935
Alignment:
Q  43 ttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaa 142  Q
    ||||||||| || || ||||| |||| ||||||||||||||| ||  ||| ||| || ||| | |||||| |||| ||||| |||||||||| ||  | |    
T  21779662 ttttcttttcattgtgactccgaattcctcagtcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaatgatacaacaacatcgca 21779761  T
Q  143 agtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaa 242  Q
    || | |  ||||| |||| |||||||||||||  | ||||| ||||||||||||||||| || || |||||||||||||||||| |||||||  | ||||    
T  21779762 agggtcgtctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaa 21779861  T
Q  243 aagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
     |  |||| ||||||||||||| ||||||||| |||| ||||||||||| || |||| ||||||| ||||||||    
T  21779862 tatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctcttgcaattgcc 21779935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 38 - 316
Target Start/End: Complemental strand, 6910 - 6632
Alignment:
Q  38 tcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatca 137  Q
    ||||| |||||| | || ||||||||||||| ||| ||||||||||| ||  ||| ||| ||||||   |||||| |||| ||||| |||||||||| ||    
T  6910 tcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttttgattccacatggaagcttccagtcaaaatgatacaacaaca 6811  T
Q  138 atgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgta 237  Q
      | ||| |||| |||||||||| ||||||||||| |  | ||||| || ||||||||||| || || |||||||||||||||||||||  |||||| ||    
T  6810 tcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaaaaggaatgtactcaaaattaccccctttata 6711  T
Q  238 atcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
     |||| || |||  |  |||||||||| |||||||||||||| |||||||||||  | |||| ||||||| ||||||||    
T  6710 gtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatctcttgcaattgcc 6632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 2433708 - 2433634
Alignment:
Q  168 caaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaa 242  Q
    ||||||| || |||||||||||||| ||||| || || ||||| |||||||||||||||| ||||||||||||||    
T  2433708 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaa 2433634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 7154561 - 7154485
Alignment:
Q  166 accaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaa 242  Q
    ||||||||  ||||||||||| ||||||||||| || || |||||||| |||||||||||| | |||||| ||||||    
T  7154561 accaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaa 7154485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 31187742 - 31187891
Alignment:
Q  167 ccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccg 266  Q
    |||||||  ||||||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||| ||||||  | ||||  ||  || ||||| |    
T  31187742 ccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcag 31187841  T
Q  267 gataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    | | ||| ||||||| ||| | ||||||| ||  ||||||||||||||||    
T  31187842 gtttaaaactctcagcttctgcccaatacctttcatctcttccaattgcc 31187891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 316
Target Start/End: Complemental strand, 31226036 - 31225887
Alignment:
Q  167 ccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccg 266  Q
    |||||||  ||||||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||| ||||||  | ||||  ||  || ||||| |    
T  31226036 ccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcag 31225937  T
Q  267 gataaaacctctcaggttcagtccaatactttgaatctcttccaattgcc 316  Q
    | | ||| ||||||| ||| | ||||||| ||  ||||||||||||||||    
T  31225936 gtttaaaactctcagcttctgcccaatacctttcatctcttccaattgcc 31225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 31177679 - 31177754
Alignment:
Q  167 ccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaa 242  Q
    |||||||  ||||||||||| ||||||||||| || ||||| || ||||||||||| || || |||||| ||||||    
T  31177679 ccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaa 31177754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 41317229 - 41317195
Alignment:
Q  95 ttcattccattgggaagcctccaatcaaagtgata 129  Q
    |||||||||||||||||| ||||||||||||||||    
T  41317229 ttcattccattgggaagcttccaatcaaagtgata 41317195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 41329269 - 41329236
Alignment:
Q  96 tcattccattgggaagcctccaatcaaagtgata 129  Q
    ||||||||||||||||| ||||||||||||||||    
T  41329269 tcattccattgggaagcttccaatcaaagtgata 41329236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 5594310 - 5594198
Alignment:
Q  114 tccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgtta-tgcctggacatattcttcttccggcgccgaaaggaa 212  Q
    |||||||||||||||||| || ||||| |||||   |||||||||| | |||||||||||| | |||| ||| | |||||||| || || || |||||||    
T  5594310 tccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccagcaccaaaaggaa 5594212  T
Q  213 tgtactcaaaatta 226  Q
    || |||||||||||    
T  5594211 tgaactcaaaatta 5594198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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