View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_39 (Length: 293)
Name: NF19787_low_39
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_39 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 138 - 293
Target Start/End: Original strand, 42091679 - 42091833
Alignment:
| Q |
138 |
aatgtgccctattggggtatcgttaacaagtgtcaatccgtgaggcatacataatttgagagtaatttgcccctattgacaagtagtactcgattttgga |
237 |
Q |
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| T |
42091679 |
aatgtgccctattggg-tatcgttaacaagtgtcaatccgtgaggcatacataatttgagagtagttttcccctattgacaagtagtactcgattttgga |
42091777 |
T |
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| Q |
238 |
gtgaaagatattgaaatcacatgttaaatgaaagagatgaaagagtttgatgtttt |
293 |
Q |
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| T |
42091778 |
gtgaaagatattgaaatcacatgttaaatgaaagagatgaaaaagtttgatgtttt |
42091833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 42091580 - 42091665
Alignment:
| Q |
1 |
aatggagaaaacattggcaatgcatagcataggaatcatatgtgatatcagcaacaaaactttaaatacagacagtcacaatctat |
86 |
Q |
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| T |
42091580 |
aatggagaaaacattggcaatgcatagcataggaatcatatgtgatatcagcaacaaaactttaaatacagacggtcacaatctat |
42091665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 6630324 - 6630422
Alignment:
| Q |
193 |
ttgagagtaatttgcccctattgacaagtagtactcgattttggagtgaaagatattgaaatcacatgttaaatgaaagagatgaaagagtttgatgtt |
291 |
Q |
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| T |
6630324 |
ttgagagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatgttgaatgaaaaagatgaaaaagtttgatgtt |
6630422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 37010321 - 37010387
Alignment:
| Q |
227 |
tcgattttggagtgaaagatattgaaatcacatgttaaatgaaagagatgaaagagtttgatgtttt |
293 |
Q |
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| T |
37010321 |
tcgattatggaatgaaggagatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttt |
37010387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 7405393 - 7405421
Alignment:
| Q |
251 |
aaatcacatgttaaatgaaagagatgaaa |
279 |
Q |
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| T |
7405393 |
aaatcacatgttaaatgaaagagatgaaa |
7405421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 39730312 - 39730346
Alignment:
| Q |
257 |
catgttaaatgaaagagatgaaagagtttgatgtt |
291 |
Q |
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| T |
39730312 |
catgttaaatgaaagagatgaaaaagtttgatgtt |
39730346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 12145093 - 12145005
Alignment:
| Q |
200 |
taatttgcccctattgacaagtagtactcgattttggagtgaaagatattgaaatcacatgttaaatgaaagagatgaaagagtttgat |
288 |
Q |
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| T |
12145093 |
taatttacctctattgataagtaggatttgattttagagtgacagagatgaaaatcacatgttgaatgaatgagatgaagaagtttgat |
12145005 |
T |
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