View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19787_low_4 (Length: 617)
Name: NF19787_low_4
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 224 - 598
Target Start/End: Original strand, 14784814 - 14785188
Alignment:
| Q |
224 |
gtaacgagatgtaaaaaattcaaatgaactttttatgggttaagtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaa |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14784814 |
gtaacgagatgtaaaaaattcaaatgaacattttatgggttaaatatgac-aatctcgcagaccc-gtcttgtggggcaagacatttgttgtcttccaaa |
14784911 |
T |
|
| Q |
324 |
gaatgagggtggcctagacataagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggt |
423 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14784912 |
gaatgagggtggcctagacataagagaactcatcagatgaatgatgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggt |
14785011 |
T |
|
| Q |
424 |
gcaagattctttatagtaagtgtgggagtaataaagatcttagagtaaccatagattctcaattatatgat--tctcctttgtggaaagctttaacaggt |
521 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
14785012 |
gcaaggttctttatagtaagtgtgggagtaataaagatcttagagaaaccatagattctcaatcatatgattctctcctttgtggaaagctttaacaggt |
14785111 |
T |
|
| Q |
522 |
atctgggatcaatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgggtggataaata |
598 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
14785112 |
atctgggatcaatttcagcaaaatattgtgtggtagctgagcaatgataacaatattaatttttggatggataaata |
14785188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 14784643 - 14784813
Alignment:
| Q |
16 |
aatatggcgaggtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtt |
115 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14784643 |
aatatggcgaggtatttggaggcaaacataagtccaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtt |
14784742 |
T |
|
| Q |
116 |
tggaagcaacaatgcttaagttttgatggcaaacttattccatctaaatcagctttgagctcttatcatac |
186 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
14784743 |
tggaagcaacaatgcttgagttttgatggcaaacttacgctatctaaatcagttttgagctcttatcatac |
14784813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 69 - 597
Target Start/End: Complemental strand, 31116960 - 31116429
Alignment:
| Q |
69 |
aaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaacaatgcttaagttttgatggcaaacttattccatctaaatcagc |
168 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||| |||| ||||||||| |||||||| ||||||||||||||| | || ||||| | |||||||||||| |
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|
| T |
31116960 |
aaagtttcataacatcattgaaaaaattcaaaacagactaagtggtt-ggaagcaataatgcttaagttttgccgacagacttactttatctaaatcagc |
31116862 |
T |
|
| Q |
169 |
tttgagctct-tatcatactatcatatgcagtattctaagcagcctaagaccctttgtaacgagatgtaaaaaat--tcaaatgaactttttatgggtta |
265 |
Q |
| |
|
|||||||| | || |||||||||||||||||||| |||||| ||||| |||||||||| ||| ||| |||||| ||||| || ||||||||||| | |
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|
| T |
31116861 |
tttgagctttataccatactatcatatgcagtatgctaagctccctaaaaccctttgtagcgaaatgaaaaaaaaaatcaaaggagctttttatgggatg |
31116762 |
T |
|
| Q |
266 |
agtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaa |
364 |
Q |
| |
|
| | |||||||| ||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||| |
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|
| T |
31116761 |
atattaaccaatcttgcagaccccatcttgtgggatgggacatttgttgtcttcctaaaaatgagggtggcctaggcattaagagacctcatcatatgaa |
31116662 |
T |
|
| Q |
365 |
tgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaagatctt |
464 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| | || ||||| ||||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||||| |
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|
| T |
31116661 |
agacgtttttcttatgaagatgcttttgaatctgatcaccaagcttgatgacctatggtgtaagcttctttatagtaagtatgggaggaataaagatctt |
31116562 |
T |
|
| Q |
465 |
agagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtggtggctgagca |
564 |
Q |
| |
|
|| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||| ||| ||| |
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|
| T |
31116561 |
agggtaaccatagattctaaatcatatgattcccctttgtggaaagctttaacaagtatttgggattaatttaagcaaaatattgtgtggcagcttggca |
31116462 |
T |
|
| Q |
565 |
atggtaacaatattaatttttgggtggataaat |
597 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||| |
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|
| T |
31116461 |
atggtaacaatattaacttttggatcgataaat |
31116429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 488 - 597
Target Start/End: Original strand, 38061701 - 38061810
Alignment:
| Q |
488 |
atatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgg |
587 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||||| | || || ||||||| |||||||||||||| |
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|
| T |
38061701 |
atatgattctcctttatggaaagctttaacatgtatttgggaacgatttcagcaaaatattgtgtggcagttgggcgatggtaataatattaatttttga |
38061800 |
T |
|
| Q |
588 |
gtggataaat |
597 |
Q |
| |
|
||||||||| |
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| T |
38061801 |
atggataaat |
38061810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 27 - 597
Target Start/End: Complemental strand, 48899382 - 48898812
Alignment:
| Q |
27 |
gtatttggaggcaaacataagttcaggtagagctaccaagggaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaaca |
126 |
Q |
| |
|
|||||||| ||| ||||| ||| ||||||||||||| | |||||||||||||||| || ||||||||||| ||| ||| ||||||||| |||||||||| |
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|
| T |
48899382 |
gtatttgggggctaacattagtgcaggtagagctactaggggaaagtttcataacgtcattgacaaaattcaaaatagactaagtggtt-ggaagcaaca |
48899284 |
T |
|
| Q |
127 |
atgcttaagttttgatggcaaacttattccatctaaatcagctttgagctct-tatcatactatcatatgcagtattctaagcagcctaagaccctttgt |
225 |
Q |
| |
|
||||||| |||||| || | ||||| | |||||||| || |||||||||| || | |||||||||||||||||| |||||| ||||| | |||||| |
|
|
| T |
48899283 |
atgctta-gttttgtcggtagacttactttatctaaattagttttgagctctataccttactatcatatgcagtatgctaagctccctaaaatgctttgt |
48899185 |
T |
|
| Q |
226 |
aacgagatgtaaaaaattcaaatgaactttttatgggttaagtatgaccaatctcgcagaccccgtcttgtggggcaagacatttgttgtcttccaaaga |
325 |
Q |
| |
|
||||||||| |||||||||| | || ||||||||||||| | |||||||||||||| | ||| |||||| || ||||||||||||||||| |||| |
|
|
| T |
48899184 |
aacgagatggaaaaaattcagaggagctttttatgggttgatactgaccaatctcgcaaaacccatcttgttggatgggacatttgttgtcttcctaaga |
48899085 |
T |
|
| Q |
326 |
atgagggtggcctagacat-aagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtg |
424 |
Q |
| |
|
||||||||||||||| ||| || | ||||||| | ||||||||||||||||||| ||||||| |||||||| | || ||||| | | ||||||| ||||| |
|
|
| T |
48899084 |
atgagggtggcctaggcattaaaaaacctcataatatgaatgacgcttttcttatgaagatgttttggaatctaatcaccaagcctaatgacctatggtg |
48898985 |
T |
|
| Q |
425 |
caagattctttatagtaagtgtgggagtaataaagatcttagagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatc |
524 |
Q |
| |
|
||| |||| |||||||||| |||||| |||||||||||||| ||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
48898984 |
taaggttctctatagtaagtatgggaggaataaagatcttagggtagccatagattctaaatcatatgattctcctttatggaaagctttaacaggttat |
48898885 |
T |
|
| Q |
525 |
tgggatcaatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgggtggataaat |
597 |
Q |
| |
|
||||| |||||||| ||||||||||||||| | || || ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
48898884 |
tgggaacaatttcaacaaaatattgtgtggcagttgggcgatggtaataatattaatttttggatggataaat |
48898812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 554
Target Start/End: Complemental strand, 34184326 - 34184264
Alignment:
| Q |
492 |
gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg |
554 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || ||||| | ||||||||||||||||||||| |
|
|
| T |
34184326 |
gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg |
34184264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 554
Target Start/End: Complemental strand, 34204915 - 34204853
Alignment:
| Q |
492 |
gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg |
554 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || ||||| | ||||||||||||||||||||| |
|
|
| T |
34204915 |
gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg |
34204853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 307 - 537
Target Start/End: Original strand, 26084777 - 26085008
Alignment:
| Q |
307 |
atttgttgtcttccaaagaatgagggtggcctagacat-aagagacctcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataacca |
405 |
Q |
| |
|
|||||||||||||| || | | |||||||| ||| ||| ||||||||||| || ||||||||||||||||| | ||||||| |||||||| | || || | |
|
|
| T |
26084777 |
atttgttgtcttcccaaaattaagggtggcttaggcattaagagacctcaccatatgaatgacgcttttctaatgaagatgttttggaatttgatcacaa |
26084876 |
T |
|
| Q |
406 |
aacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaagatcttagagtaaccatagattctcaattatatgattctcctttgtg |
505 |
Q |
| |
|
||| |||||||||||| ||| |||| | | |||||| ||| || || || || ||| ||||||||| |||||||| ||| ||||||| | || |
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|
| T |
26084877 |
aaccagatgacctttggcataaggttctctgtggtaagtatggaaggaacaacgacaatagggtaaccataaattctcaaccttataattctccactatg |
26084976 |
T |
|
| Q |
506 |
gaaagctttaacaggtatctgggatcaatttc |
537 |
Q |
| |
|
|||||||||| || |||| || |||||||||| |
|
|
| T |
26084977 |
gaaagctttagcatgtatttgagatcaatttc |
26085008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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