View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_40 (Length: 288)

Name: NF19787_low_40
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_40
NF19787_low_40
[»] chr1 (1 HSPs)
chr1 (1-274)||(52472728-52473001)
[»] chr5 (1 HSPs)
chr5 (143-267)||(38793250-38793374)
[»] chr7 (1 HSPs)
chr7 (175-258)||(7763371-7763454)
[»] chr2 (3 HSPs)
chr2 (174-270)||(5839673-5839769)
chr2 (174-258)||(33369633-33369717)
chr2 (174-258)||(33363202-33363286)
[»] chr4 (1 HSPs)
chr4 (162-270)||(1004459-1004567)
[»] chr6 (1 HSPs)
chr6 (174-235)||(11719487-11719548)
[»] scaffold0648 (1 HSPs)
scaffold0648 (174-243)||(5460-5529)
[»] scaffold0274 (1 HSPs)
scaffold0274 (174-243)||(17929-17998)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 52473001 - 52472728
Alignment:
Q  1 atccttgattcataaagaaacagtgagattgagcagaatcccataataacaataattggatacaatccacacggtcacgatacatatcattcagcttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  52473001 atccttgattcataaagaaacagtgagattgagcagaatcccataataacaataattggatacaatccacacggtcacgatacaggtcattcagcttgaa 52472902  T
Q  101 aagacggagtaaatactaaatatgatatgacatgtaagtattacaagctattttgcaataggaacacaaaaccaactcacccggcaaatccttctccaaa 200  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52472901 aagatggagtaaatgctaaatatgatatgacatgtaagtattacaagctattttgcaataggaacacaaaaccaactcacccggcaaatccttctccaaa 52472802  T
Q  201 atcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaatttg 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52472801 atcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaatttg 52472728  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 267
Target Start/End: Original strand, 38793250 - 38793374
Alignment:
Q  143 acaagctattttgcaataggaacacaaaaccaactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctgga 242  Q
    ||||||||||||| || ||||| ||||||| | |||||| ||| ||||||||||||||||||| | |||||||  |||||||||||||||||| ||| ||    
T  38793250 acaagctattttgtaagaggaatacaaaacaatctcacctggctaatccttctccaaaatctttctttctttccggatttctttagcccaattttcttga 38793349  T
Q  243 tgctgttcaggaaataagttcattg 267  Q
    |||||||||||||||| ||||||||    
T  38793350 tgctgttcaggaaataggttcattg 38793374  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 7763371 - 7763454
Alignment:
Q  175 actcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata 258  Q
    ||||||||||||||| ||||||||||||| |||| |||| || ||||| |||||||||||||| ||||| ||| ||||||||||    
T  7763371 actcacccggcaaatgcttctccaaaatcctccactcttcctggatttttttagcccaattctttggattctgctcaggaaata 7763454  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 5839673 - 5839769
Alignment:
Q  174 aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaa 270  Q
    |||||||| |||||||  ||||| ||||||||||| ||||||| ||||  |||||||||||||  | ||||||||| | |||||| |||||||||||    
T  5839673 aactcacctggcaaattgttctctaaaatcttccactctttctggattcttttagcccaattcctttgatgctgttaatgaaataggttcattgtaa 5839769  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 33369717 - 33369633
Alignment:
Q  174 aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata 258  Q
    ||||| ||||| |||| || ||||||||||||||| |||| || ||||| |||||||||| ||| ||||| ||| ||||||||||    
T  33369717 aactcgcccggaaaatgctcctccaaaatcttccactcttcctggatttttttagcccaactctttggattctgatcaggaaata 33369633  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 33363286 - 33363202
Alignment:
Q  174 aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata 258  Q
    |||||||||||||||| || |||||||||| |||| |||| || ||||| |||||||||| |||  |||| ||| | ||||||||    
T  33363286 aactcacccggcaaatgctcctccaaaatcctccactcttcctggatttttttagcccaactcttcggattctgcttaggaaata 33363202  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 1004567 - 1004459
Alignment:
Q  162 gaacacaaaaccaactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagt 261  Q
    ||||||||| | ||| ||||||||||||||||||||||||| | ||| |||| || |||| | |  | |||||| | ||||||||||| ||||||| |||    
T  1004567 gaacacaaagcaaacccacccggcaaatccttctccaaaatttcccagtcttcctggattgcatccgaccaattatttggatgctgttaaggaaatgagt 1004468  T
Q  262 tcattgtaa 270  Q
     ||||||||    
T  1004467 acattgtaa 1004459  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 11719548 - 11719487
Alignment:
Q  174 aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaatt 235  Q
    |||| ||||||||||  || ||||||||||||||| ||||||| |||| |||||||||||||    
T  11719548 aactaacccggcaaactctcctccaaaatcttccactctttctggattactttagcccaatt 11719487  T

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Target: scaffold0648 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 5529 - 5460
Alignment:
Q  174 aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggat 243  Q
    |||||||||||||  |  ||||||||||||||||| |||| || ||||| |||||||||| ||| |||||    
T  5529 aactcacccggcacgtgattctccaaaatcttccactcttcctggatttttttagcccaactctttggat 5460  T

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Target: scaffold0274 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 17929 - 17998
Alignment:
Q  174 aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggat 243  Q
    |||||||||||||  |  ||||||||||||||||| |||| || ||||| |||||||||| ||| |||||    
T  17929 aactcacccggcacgtgattctccaaaatcttccactcttcctggatttttttagcccaactctttggat 17998  T

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