View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_45 (Length: 274)
Name: NF19787_low_45
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_45 |
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| [»] scaffold0111 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 91 - 264
Target Start/End: Original strand, 43536336 - 43536509
Alignment:
| Q |
91 |
atactaaagattaaatagttaaattattaaactaatgctattttaaggccgtatcagctatatgtcataaaatttagaagaccaaaaatttaaggaannn |
190 |
Q |
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| T |
43536336 |
atactaaagattaaacagttaaattattaaactaatgctattttaaggctgtatcagctatatgtcataaaatttagaagaccaaaaatttaaggaattt |
43536435 |
T |
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| Q |
191 |
nnnnagcgactaaaacttaaagttggtatatttagaggaactataaacatatttattaaatatgttggtgatga |
264 |
Q |
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| T |
43536436 |
ttttagggactaaaacttaaagttggtatatttagaggaactataaacatatttattaaatatgttggtgatga |
43536509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 54361762 - 54361719
Alignment:
| Q |
95 |
taaagattaaatagttaaattattaaactaatgctattttaagg |
138 |
Q |
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| T |
54361762 |
taaagattaaatagttagattattaaactaatgatattttaagg |
54361719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 42111648 - 42111612
Alignment:
| Q |
100 |
attaaatagttaaattattaaactaatgctattttaa |
136 |
Q |
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| T |
42111648 |
attaaatagttaaattattaaactaatgatattttaa |
42111612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 18798460 - 18798507
Alignment:
| Q |
198 |
gactaaaacttaaagttggtatatttagaggaactataaacatattta |
245 |
Q |
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| T |
18798460 |
gactaaaacaaaaagttggtatatttataggaactaaaaacatattta |
18798507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 47587443 - 47587486
Alignment:
| Q |
95 |
taaagattaaatagttaaattattaaactaatgctattttaagg |
138 |
Q |
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|||| |||||||| ||||||||||||||||||| |||||||||| |
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| T |
47587443 |
taaatattaaatatttaaattattaaactaatgatattttaagg |
47587486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 9661806 - 9661765
Alignment:
| Q |
95 |
taaagattaaatagttaaattattaaactaatgctattttaa |
136 |
Q |
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| T |
9661806 |
taaagattaaatagttaaattattaagttaatgatattttaa |
9661765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 29181282 - 29181320
Alignment:
| Q |
97 |
aagattaaatagttaaattattaaactaatgctatttta |
135 |
Q |
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| T |
29181282 |
aagatttaatagttaaattattaaactaatgatatttta |
29181320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 37991939 - 37991980
Alignment:
| Q |
95 |
taaagattaaatagttaaattattaaactaatgctattttaa |
136 |
Q |
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| T |
37991939 |
taaagatgaaatagttaaattattaaactaatagtattttaa |
37991980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 557876 - 557835
Alignment:
| Q |
95 |
taaagattaaatagttaaattattaaactaatgctattttaa |
136 |
Q |
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| T |
557876 |
taaagattaaatagttaaactattaaactaataatattttaa |
557835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 40810 - 40846
Alignment:
| Q |
209 |
aaagttggtatatttagaggaactataaacatattta |
245 |
Q |
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| T |
40810 |
aaagttggtatatttataggaactaaaaacatattta |
40846 |
T |
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