View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_46 (Length: 272)
Name: NF19787_low_46
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 9989117 - 9988874
Alignment:
| Q |
14 |
cacagagcaaaatccaaatgaaaagttctagagaagacaagggaaaaagacataa-catgcatgtccattaacaaatccaacatccttatcatattatta |
112 |
Q |
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| T |
9989117 |
cacagagcaaaatccaaatgaaaagttctagagaagacaagggaaaaagacataaacatgcatgtccattaacaaatcaaacatccttatcatattatta |
9989018 |
T |
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| Q |
113 |
atgaaaataaacaactaaaccaatgtttggtaatttaaaaacatcatagaatacaaaaccattcatcaaatagtgctagcgcctagacccatttcaattt |
212 |
Q |
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| T |
9989017 |
atgaaaataaacaactaaaccaatgtttggtaattaaaaaacatcatagaatacaaaaccattcatcaaatagtgctagcgcctagacccattacaattt |
9988918 |
T |
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| Q |
213 |
tagtcatgaaatttatttgccaccaacaaacgaaaacttcgatt |
256 |
Q |
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| T |
9988917 |
tagtcctgaaatttattttccaccaataaacgaaaacttcgatt |
9988874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 10001164 - 10001050
Alignment:
| Q |
111 |
taatgaaaataaacaactaaaccaatgtttggtaatttaaaaacatcatagaatacaaaaccattcatcaaatagtgctagcgcctagacccatttcaat |
210 |
Q |
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| T |
10001164 |
taatgaaaataagcaactaaaccaatgtttggtaattaaaaaacatcatggaaaacaaaaccattcataaaatagt-------tctagacccatttctag |
10001072 |
T |
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| Q |
211 |
tttagtcatgaaatttatttgc |
232 |
Q |
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| T |
10001071 |
tttggtcatgaaatttatttgc |
10001050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9995300 - 9995248
Alignment:
| Q |
196 |
tagacccatttcaattttagtcatgaaatttatttgccaccaacaaacgaaaa |
248 |
Q |
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| T |
9995300 |
tagacccatttcaattttagtcatgaagtttatttgcaaccaataaacaaaaa |
9995248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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