View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_47 (Length: 266)
Name: NF19787_low_47
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 2363353 - 2363590
Alignment:
| Q |
19 |
attagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaactttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2363353 |
attagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaactttt |
2363452 |
T |
|
| Q |
119 |
ggattaagcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtgactttgtgttagcattatat |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2363453 |
ggattaagcaacaccaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtgactttgtgttagcattatat |
2363552 |
T |
|
| Q |
219 |
ttataatattttgtgttttcaaactttgtaatcctttg |
256 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
2363553 |
ttataatattttgtgttttgaaactttgtaatcctttg |
2363590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 2369106 - 2369279
Alignment:
| Q |
26 |
cttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaa |
125 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2369106 |
cttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgactgaaacttttggattaa |
2369205 |
T |
|
| Q |
126 |
gcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtga |
199 |
Q |
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| T |
2369206 |
ccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtga |
2369279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 2307595 - 2307774
Alignment:
| Q |
26 |
cttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaa |
125 |
Q |
| |
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||||||||||||||||| | | | ||||||||||||||||||||||| |||||||||||| | ||||| | ||||||||| |||| | |||||||||| |
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| T |
2307595 |
cttcaaatgctgcatttcattctagctagttttttgcattcctttgatatcttaaatccaacccctgaacttgttgatatgagtgaatcctttggattaa |
2307694 |
T |
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| Q |
126 |
gcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtgactttgt |
205 |
Q |
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| T |
2307695 |
caaacactaaagctactcctcttaagattctcattaaaccacatttgtctatcaattgttatgaaatcatgtgattttgt |
2307774 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 2340276 - 2340449
Alignment:
| Q |
26 |
cttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaa |
125 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||| || ||| || ||||||||| |||| | ||||||| || |
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| T |
2340276 |
cttcaaatgctgcatttcaccctagctagttttttgcattcctttgatatcttaaatccaacacctgatgctgttgatatgagtgaagcctttggatcaa |
2340375 |
T |
|
| Q |
126 |
gcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtga |
199 |
Q |
| |
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|| | ||| | ||||| ||||||||||| || || |||||||||||| ||||||||||| |||||||| |
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| T |
2340376 |
cgaattccaaagctactccacttgagattctcattaaaccacgtttgtctcacaattgttatgagtttatgtga |
2340449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 2358049 - 2358126
Alignment:
| Q |
30 |
aaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatga |
107 |
Q |
| |
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||||| ||||||||| |||||||| |||||||||||| ||||||||||| || |||| ||||| ||||||||||||| |
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| T |
2358049 |
aaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatga |
2358126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 2261235 - 2261160
Alignment:
| Q |
38 |
catttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaa |
113 |
Q |
| |
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|||||||||||||||| |||||| || ||||||||||| ||||| ||| ||||||||| ||||||||| ||||| |
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| T |
2261235 |
catttaactttggctaattttttacactcctttgaaattgtaaatggatctagtgaacctgttgatatgactgaaa |
2261160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 2351729 - 2351788
Alignment:
| Q |
26 |
cttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
85 |
Q |
| |
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|||||||| ||||||| ||| | || |||||||||||||||||||| |||||||||||| |
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| T |
2351729 |
cttcaaattgtgcatttcactctagcaagttttttgcattcctttgatatcttaaatcca |
2351788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 4306058 - 4306222
Alignment:
| Q |
26 |
cttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaa |
125 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||| |||||||| | | |
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| T |
4306058 |
cttcaaatggtgcatttatctttggctagttttttgcattcctttgaaatctcaaaggcatcagctgaacctattgatatgactgaagcttttggaatca |
4306157 |
T |
|
| Q |
126 |
gcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaa |
190 |
Q |
| |
|
|||| || ||||||| || ||||||||||| ||||| |||||| |||| |||||||||||| |
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|
| T |
4306158 |
ccaaccacaaggcaactccactagagattcttattaagcctcgtttgccttctaattgttatgaa |
4306222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 5804208 - 5804045
Alignment:
| Q |
26 |
cttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaa |
125 |
Q |
| |
|
||||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||| |||| |||||||||| |
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|
| T |
5804208 |
cttcaaatggtgcattttactctagctagttttttgcattcctttgatatcttaaatccaacacctgaacttattgatatgactgaagaatttggattaa |
5804109 |
T |
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| Q |
126 |
gcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatga |
189 |
Q |
| |
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|| | ||| | ||||| ||||| ||||| || || |||||||||||| ||||||||||| |
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|
| T |
5804108 |
caaatagcaaagctactccacttgaaattctcattaaaccacgtttgtctctcaattgttatga |
5804045 |
T |
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