View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_48 (Length: 265)
Name: NF19787_low_48
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 14665378 - 14665138
Alignment:
| Q |
18 |
tattgacatataaaagattttgcagcttgagaatgtggattcaaagtgcgtggttgatcaattccacagcaagagtctagaggtgtcggatcttagtgat |
117 |
Q |
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| T |
14665378 |
tattgacatataaaagattttgcagcttgagaatgtggattcaaagtgcgtggttgatcaattccacagtaagagtctagaggtgtcggatcttagtgat |
14665279 |
T |
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| Q |
118 |
gttatccgagcccgaagatataatcttgtccgttataaaatctaagattgagcttataaggagaaaagtcaatgacgttgctc--gtgttagcaagggcg |
215 |
Q |
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| T |
14665278 |
gtta-ccgagcccgaagatataatcttgtccgttgtaaaatctatgattgagcttataaggagaaaagtcaatgacgttgctcatgtgttagcaagggcg |
14665180 |
T |
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| Q |
216 |
gccttatttttagatagtttcttcattttcaatgatattctt |
257 |
Q |
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| T |
14665179 |
gccttatttttagctagcttctgcattttcaatgatattctt |
14665138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 14668435 - 14668331
Alignment:
| Q |
53 |
tggattcaaagtgcgtggttgatcaattccacagcaagagtctagaggtgtcggatcttagtgatgttatccgagcccgaagatataatcttgtccgtta |
152 |
Q |
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| T |
14668435 |
tggattcaaagtgcgtggttgataaattccacagtaaaagtctaggggtgtcggatctaagtgatattatccgagaccgtagagatattcttgtccgttg |
14668336 |
T |
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| Q |
153 |
taaaa |
157 |
Q |
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||||| |
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| T |
14668335 |
taaaa |
14668331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 14702763 - 14702867
Alignment:
| Q |
53 |
tggattcaaagtgcgtggttgatcaattccacagcaagagtctagaggtgtcggatcttagtgatgttatccgagcccgaagatataatcttgtccgtta |
152 |
Q |
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| T |
14702763 |
tggattcaaagtgtgcggttgataaactccacagtaagagtctaggggtgtcggatcatagtgatattatccaagactgatgatataatctagtccgttg |
14702862 |
T |
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| Q |
153 |
taaaa |
157 |
Q |
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||||| |
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| T |
14702863 |
taaaa |
14702867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 14707436 - 14707548
Alignment:
| Q |
112 |
agtgatgttatccgagcccgaagatataatcttgtccgttataaaatctaagattgagcttataaggagaaaagtcaatgacgttgctc----gtgttag |
207 |
Q |
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| T |
14707436 |
agtgatattatccgagaccgtagagataatcttgtccgttgtaaaaattaagattgagtttattaggagacaagtcaaaagggttgctcataagtgttag |
14707535 |
T |
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| Q |
208 |
caagggcggcctt |
220 |
Q |
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| T |
14707536 |
caagggcggcctt |
14707548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 30732764 - 30732935
Alignment:
| Q |
53 |
tggattcaaagtgcgtggttgatcaattccacagcaagagtctagaggtgtcggatcttagtgatgttatccgagcccgaagatataatcttgtccgtta |
152 |
Q |
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||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||| |||| | ||||||||| ||| ||| |||||||| |||||| |
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| T |
30732764 |
tggattcaaagtgcgtggttgataaattccacagtaaaagtctaggggtgtcggatctaagtggtattatccgagaccgtagagataatcttatccgttg |
30732863 |
T |
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| Q |
153 |
taaaatctaagattgagcttataaggagaaaagtcaatgacgttgctc----gtgttagcaagggcggcctt |
220 |
Q |
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||||| ||| |||| |||| |||||| ||||||| ||||||| |||||||||||||||||||| |
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| T |
30732864 |
taaaaattaaagatgagtttattaggagacaagtcaaaagggttgctcataagtgttagcaagggcggcctt |
30732935 |
T |
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