View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_5 (Length: 597)
Name: NF19787_low_5
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 6665159 - 6664716
Alignment:
| Q |
17 |
catcgtgtgtcgtggagttctgcagccgcggagaatagcatgccggagaaaattgtgatagagattagtgacatcattaggtagtggattgcgggaatag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6665159 |
catcgtgtgtcgtggagttctgcagccgcggagaatagcatgccggagaaaattgtgatagagattagtgacatcattaggtagtggattgcgggaatag |
6665060 |
T |
|
| Q |
117 |
gccccagtcggacagcctgactgcgtttgaagatcttaaggatgatgtggagggtgagtgccgcagttatataagcggcgatggctgtgacgaggaatgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6665059 |
gccccagtcggacagcctgactgcgtttgaagatcttaaggatgatgtggagggtgagtgccgcagttatataagcggcgatggctgtgacgaggaatgg |
6664960 |
T |
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| Q |
217 |
ccatgtgctgccccatgattggctcggactccatcggaaccaatctattgatggatggtcaattagccaatattttagggtctgtttcagttggaatatc |
316 |
Q |
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| T |
6664959 |
ccatgtgccgccccatgattgggtcggactccatcggaaccaaactatggatggatggtctattagccaatattttagggtctctttcagttggaatatc |
6664860 |
T |
|
| Q |
317 |
atttggaagactatttggtaggatgttcttaggaaatgagtaaggaannnnnnnnnnnnnnnnnnnnnnnacgttaatttgttaagtcttgaaagtgggg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6664859 |
atttggaagactatttggtaggatgttcttaggaaatgagtaaggaatgtgtgtttgtgtgtaagtgtgtacgttaatttgttaagtcttgaaagtgggg |
6664760 |
T |
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| Q |
417 |
tttgtcttgttttgaatggtaagaatttggagtgtggaaattat |
460 |
Q |
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| T |
6664759 |
tttgtcttgttttgattggtaagaatttggagtgtggaaattat |
6664716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 6664720 - 6664668
Alignment:
| Q |
530 |
attataatgtgttgtgatgtaggcacaagaagacttgtgaggagtgaaatatt |
582 |
Q |
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| T |
6664720 |
attataatgtgttgtgatgtaggcacaagaagacttgtgaggagtgaaatatt |
6664668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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