View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_55 (Length: 257)

Name: NF19787_low_55
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_55
NF19787_low_55
[»] chr6 (2 HSPs)
chr6 (19-244)||(13409861-13410086)
chr6 (83-215)||(10554607-10554739)
[»] chr1 (1 HSPs)
chr1 (51-232)||(44331736-44331917)
[»] chr3 (2 HSPs)
chr3 (50-250)||(43490025-43490224)
chr3 (56-158)||(45013877-45013979)
[»] chr8 (1 HSPs)
chr8 (50-231)||(38653101-38653282)
[»] chr7 (2 HSPs)
chr7 (120-227)||(6583050-6583157)
chr7 (120-227)||(6568891-6568998)
[»] chr4 (3 HSPs)
chr4 (184-230)||(33750433-33750479)
chr4 (193-227)||(33718963-33718997)
chr4 (193-230)||(33720979-33721016)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 13410086 - 13409861
Alignment:
Q  19 tgttgttgcggtggcggcggcataattgatctaacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13410086 tgttgttgcggtggcggcggcataattgatctaacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccc 13409987  T
Q  119 tagctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13409986 tagctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtct 13409887  T
Q  219 cactcctctgtatcgtctcctttgct 244  Q
    ||||||||||||||||||||||||||    
T  13409886 cactcctctgtatcgtctcctttgct 13409861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 10554739 - 10554607
Alignment:
Q  83 ttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctct 182  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||| || || || || ||||| ||||||  | |||| |  ||||||||    
T  10554739 ttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttaggatctct 10554640  T
Q  183 tatttctgctgcccattttccccatggtctttg 215  Q
    |||||| ||||||||||| ||||| ||||||||    
T  10554639 tatttcagctgcccatttcccccaaggtctttg 10554607  T

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Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 44331736 - 44331917
Alignment:
Q  51 aacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcct 150  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||||||| || || ||||||||     
T  44331736 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 44331835  T
Q  151 agccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtatc 232  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  44331836 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatc 44331917  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 250
Target Start/End: Original strand, 43490025 - 43490224
Alignment:
Q  50 taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc 149  Q
    |||||||||||||||| |||||||| ||| || | ||||| || |  |  |||||||||||||| || ||||| || ||||| ||||| || ||||||||    
T  43490025 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcc 43490124  T
Q  150 tagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtatcgtctcctttgcttctcc 249  Q
    || ||||||||||  |||||||  |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||  ||| ||||||||||||    
T  43490125 taaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattttct-ctttgcttctcc 43490223  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 45013877 - 45013979
Alignment:
Q  56 tttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcctagcca 155  Q
    ||||||| || ||||| || ||| |||||||| ||||||| | ||||||||||||||| ||    |||||||| || || || || ||||||||||||||    
T  45013877 tttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagcca 45013976  T
Q  156 tac 158  Q
    |||    
T  45013977 tac 45013979  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 38653101 - 38653282
Alignment:
Q  50 taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc 149  Q
    ||||||||||||||||||||||||||||| || ||||||| || | ||||| ||||| |||||| ||  |||||||| |||| ||||| || ||||| ||    
T  38653101 taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc 38653200  T
Q  150 tagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtat 231  Q
    || ||||||||||   ||||||   ||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||    
T  38653201 taaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctctgtat 38653282  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 6583157 - 6583050
Alignment:
Q  120 agctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctc 219  Q
    ||||||| |||| |||||||| |||||||||| ||| |||||   |||||| | ||| || | |||||| ||||||||||||||||||||||||||||||    
T  6583157 agctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctttgtctc 6583058  T
Q  220 actcctct 227  Q
    ||||||||    
T  6583057 actcctct 6583050  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 6568998 - 6568891
Alignment:
Q  120 agctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctc 219  Q
    ||||||| |||| ||||| || |||||||||| ||| |||||   |||||| | ||| || | |||||| ||||||||||||||||||||||| ||||||    
T  6568998 agctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgtctc 6568899  T
Q  220 actcctct 227  Q
    ||||||||    
T  6568898 actcctct 6568891  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 33750479 - 33750433
Alignment:
Q  184 atttctgctgcccattttccccatggtctttgtctcactcctctgta 230  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||    
T  33750479 atttcagcagcccatttaccccatggtctttgtctcactcctctgta 33750433  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 33718997 - 33718963
Alignment:
Q  193 gcccattttccccatggtctttgtctcactcctct 227  Q
    |||||||||||||||||||| ||||||||||||||    
T  33718997 gcccattttccccatggtctctgtctcactcctct 33718963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 33721016 - 33720979
Alignment:
Q  193 gcccattttccccatggtctttgtctcactcctctgta 230  Q
    |||||||||||||||||||| || ||||||||||||||    
T  33721016 gcccattttccccatggtctctgcctcactcctctgta 33720979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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