View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_56 (Length: 253)
Name: NF19787_low_56
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 6779665 - 6779895
Alignment:
| Q |
18 |
accgatatctcatggaaaacaattagcaacaataggaatcaagtgcaatgtcatctaaagtaaagcaattagcaacaagtcttgaaataaaattaccaat |
117 |
Q |
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| T |
6779665 |
accgatatctcatggaaaacaattagcaacaataggaatcaagtgcaatgtcatctaaagtaaagcaattagcaacaagtcttgaaataaaattaccaat |
6779764 |
T |
|
| Q |
118 |
atctcatggtaaacaaatgtacgaagagcttctccgcttgaagtctgtcttcgaggtgtaaaatgattgacagaatcgagatatgaaatatatacacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6779765 |
atctcatggtaaacaaatgtacgaagagcttctccgcttgaagtctgtcttcgaggtgtaaaatgattgacagaatcgagatatgaaatatatacacatc |
6779864 |
T |
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| Q |
218 |
gttgattgggattgccacattccgatccata |
248 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
6779865 |
gttgattggtattgccacattccgatccata |
6779895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 6668846 - 6668620
Alignment:
| Q |
22 |
atatctcatggaaaacaattagcaacaataggaatcaagtgcaatgtcatctaaagtaaagcaattagcaacaagtcttgaaataaaattaccaatatct |
121 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
6668846 |
atatgtcatggaaaacaattagcaacagtaggaatcaagtgaaatgtcatctaaagtaaagcaattagcaacaattcttaaaatcaaattaccaatatct |
6668747 |
T |
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| Q |
122 |
catggtaaacaaatgtacgaagagcttctccgcttgaagtctgtcttcgaggtgtaaaatgattgacagaatcgagatatgaaatatatacacatcgttg |
221 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
6668746 |
catggtaaacaagtgtacgaagagcttctccgcttgtagtctgtcttcgaggtgtaaaatgattgacagaatcgagatatgaaatatatacgcagcgttg |
6668647 |
T |
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| Q |
222 |
attgggattgccacattccgatccata |
248 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
6668646 |
attgggattgccacattccgagccata |
6668620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 46522197 - 46522064
Alignment:
| Q |
106 |
aaaattaccaatatctcatggtaaacaaatgtacgaagagcttctccgcttgaagtctgtcttcgaggtgtaaaatgattgacagaatcgagatatgaaa |
205 |
Q |
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|||| ||||||||||||||||||||| || |||||||| |||||||| || ||| |||| ||| |||||| ||||||||||| |||||||||| |
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| T |
46522197 |
aaaaataccaatatctcatggtaaacgaaggtacgaagggcttctccactctttgtccttctttcaggcataaaatacttgacagaatcaagatatgaaa |
46522098 |
T |
|
| Q |
206 |
tatatacacatcgttgattgggattgccacattc |
239 |
Q |
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| T |
46522097 |
tgtatacacaacgctgattcggatttccgcattc |
46522064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 49881762 - 49881629
Alignment:
| Q |
106 |
aaaattaccaatatctcatggtaaacaaatgtacgaagagcttctccgcttgaagtctgtcttcgaggtgtaaaatgattgacagaatcgagatatgaaa |
205 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||| |||||||| || ||| ||| ||| |||||| ||||||||||| |||||||||| |
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| T |
49881762 |
aaaaataccaatatctcatggtaaacaaaggtacgaagggcttctccactctttgtccttctctcaggcctaaaatacttgacagaatcaagatatgaaa |
49881663 |
T |
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| Q |
206 |
tatatacacatcgttgattgggattgccacattc |
239 |
Q |
| |
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| | |||||| || ||||| |||||||| ||||| |
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| T |
49881662 |
tgtgtacacaacgctgatttggattgccgcattc |
49881629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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