View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_59 (Length: 250)
Name: NF19787_low_59
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 14651116 - 14650891
Alignment:
| Q |
1 |
ctttattgatattgatgttaatcatgtatagaagtatcatgtatagattatgatgttgatcttgttttgcttttcaaattggctatgtcagctaattaat |
100 |
Q |
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| T |
14651116 |
ctttatcgatattgatattgatcatgtatagaagtatcatgtatagattatgatgttcatcttgttttgcttttcgaattggctatgtctgctaattaat |
14651017 |
T |
|
| Q |
101 |
tgttgaaaaatctgttcaactagtttgaattgaaaatacctaatccataacactagataccgatacaatcacagtaaagtctcttgatattatgccttat |
200 |
Q |
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| T |
14651016 |
tgttg-aaaatttgttcaactagtttcaattgaaaatacctaattga------tagatactgatactatcacattaaagtcttttgatattatgccttaa |
14650924 |
T |
|
| Q |
201 |
tgatgaaatcaccttggtgtcaaattgattttt |
233 |
Q |
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|||| |||||||| ||||||| |||||||||| |
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| T |
14650923 |
tgatacaatcacctaggtgtcacattgattttt |
14650891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 14641462 - 14641342
Alignment:
| Q |
124 |
tttgaattgaaaatacctaatccataacactagataccgatacaatcacagtaaagtctcttgatattatgccttattgatgaaatcaccttggtgtcaa |
223 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14641462 |
tttgaattgaaaatacctaatgcataacactagataccgatacaatcacagtaaagtctcttgatattatgccttattgatgaaatcaccttggtgtcac |
14641363 |
T |
|
| Q |
224 |
attgatttttatattcttgga |
244 |
Q |
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| T |
14641362 |
attgatttttatttttttgga |
14641342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 14646453 - 14646332
Alignment:
| Q |
36 |
atcatgtatagattatgatgttgatcttgttttgcttttcaaattggctatgtcagctaattaattgttgaaaaatctgttcaactagtttgaattgaaa |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||| |||| ||| |
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| T |
14646453 |
atcatgtatagattatgatgttgatcttgttttgcttttcaaattggctttgtctgctagttacatgttgaaaaatctgttcaactagtttcaattaaaa |
14646354 |
T |
|
| Q |
136 |
atacctaatccataacactaga |
157 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
14646353 |
atacctaatcgataacactaga |
14646332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 14637978 - 14637836
Alignment:
| Q |
91 |
gctaattaattgttgaaaaatctgttcaactagtttgaattgaaaatacctaatccataacactagataccgatacaatcacagtaaagtctcttgatat |
190 |
Q |
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||||||||| ||||| ||||||| ||| || || | |||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
14637978 |
gctaattaaatgttgtaaaatctaatcatctcgtctcaattaaaaatacctaatccataacaatagatactaatacaatcacattaaagtctcttgatat |
14637879 |
T |
|
| Q |
191 |
tatgccttattgatgaaatcaccttggtgtcaaattgattttt |
233 |
Q |
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||||| ||| | || |||||||| |||||| |||||||||| |
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| T |
14637878 |
tatgcattacttatacaatcacctaggtgtcgcattgattttt |
14637836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 12890095 - 12889951
Alignment:
| Q |
91 |
gctaattaattgttgaaaaa--tctgttcaactagtttgaattgaaaatacctaatccataacactagataccgatacaatcacagtaaagtctcttgat |
188 |
Q |
| |
|
||||||||| |||||||||| ||| ||| || |||| |||||||||||||||||||||| || ||||||| ||||||||| || |||| ||||||||| |
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| T |
12890095 |
gctaattaaatgttgaaaaaaatctaatcacctcgtttcaattgaaaatacctaatccatatcaatagatactgatacaatctcattaaactctcttgat |
12889996 |
T |
|
| Q |
189 |
attatgccttattgatgaaatcaccttggtgtcaaattgattttt |
233 |
Q |
| |
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||||||||||| | || |||||| | |||||| |||||||||| |
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| T |
12889995 |
attatgccttacttatacaatcacgattgtgtcacattgattttt |
12889951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 12079969 - 12079821
Alignment:
| Q |
21 |
atcatgtatagaagtatcatgtatagattatgatgttgatcttgttttgcttttcaaattggct-----atgtca-----gctaattaattgttgaaaaa |
110 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| || ||| |||||||| |||||||||||| || |||||| ||||||||| ||||| |||| |
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| T |
12079969 |
atcatgtatagaattatcacgtatagattatgctgctgaacttgttttccttttcaaattgactagtacatgtcatggctgctaattaaatgttg-aaaa |
12079871 |
T |
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| Q |
111 |
tctgttcaactagtttgaattgaaaatacctaatccataacactagatac |
160 |
Q |
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|||| ||| || |||| ||||||||||| |||||||||||||||||||| |
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| T |
12079870 |
tctgatcacctcgtttcaattgaaaatatgtaatccataacactagatac |
12079821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 14631309 - 14631204
Alignment:
| Q |
128 |
aattgaaaatacctaatccataacactagataccgatacaatcacagtaaagtctc--ttgatattatgccttattgatgaaatcaccttggtgtcaaat |
225 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||| ||| | || |||||||| ||||||| || |
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| T |
14631309 |
aattaaaaatacctaatccataacaatagatactaatacaatcacatgaaagtctcctttgatattatgcattacttatacaatcacctaggtgtcacat |
14631210 |
T |
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| Q |
226 |
tgattt |
231 |
Q |
| |
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|||||| |
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| T |
14631209 |
tgattt |
14631204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 12072091 - 12072028
Alignment:
| Q |
136 |
atacctaatccataacactagataccgatacaatcacagtaaagtctcttgatattatgcctta |
199 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||| |||| |
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| T |
12072091 |
atacctaatccataacactagatactaatacaatcacattaaattttcttgatattatggctta |
12072028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 15608613 - 15608665
Alignment:
| Q |
92 |
ctaattaattgttgaaaaatctgttcaactagtttgaattgaaaatacctaat |
144 |
Q |
| |
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|||||||| || |||||||| || ||| ||||||| ||||||||||||||||| |
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|
| T |
15608613 |
ctaattaaatgctgaaaaatatgatcacctagttttaattgaaaatacctaat |
15608665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 15650487 - 15650539
Alignment:
| Q |
92 |
ctaattaattgttgaaaaatctgttcaactagtttgaattgaaaatacctaat |
144 |
Q |
| |
|
|||||||| || |||||||| || ||| ||||||| ||||||||||||||||| |
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|
| T |
15650487 |
ctaattaaatgctgaaaaatatgatcacctagttttaattgaaaatacctaat |
15650539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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