View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_6 (Length: 567)
Name: NF19787_low_6
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 5564452 - 5563905
Alignment:
| Q |
1 |
caaggtaaaacttaagcataatttcttacctccaattgactctgttctgtactagacacacagaactgtcaaaaactaccaaaaggtgcattgtaaaaaa |
100 |
Q |
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| T |
5564452 |
caaggtaaaacttaagcacaatttcttacctccagttgactctgttctgtactagacatacagaactgtcaaaaactaccaaaaggtgcattgtaaaaaa |
5564353 |
T |
|
| Q |
101 |
ctgttttattgtacccatttaataaaataacagtttttcgtgtctagcaaagtaagagcagtgtataagcaattgtatgcaagaatttgacacttaatct |
200 |
Q |
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| T |
5564352 |
ctgttttattgtacccatttaataaaataactgtttttcgtgtctagcaaagtaagagcagtgtataagcaattgtatgcaagaatttgacacttaatct |
5564253 |
T |
|
| Q |
201 |
gaatgtttgttcaatgccctaatttagtacaaaaagttgagttttactatggttttttattgaaatataccaatacaaaagtgtagatatataatgatga |
300 |
Q |
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| T |
5564252 |
gaatgtttgttcaatgccttaatttagtacaaaaagttgagttttactatggttttt-attgaaatatacca-tacaaaagtgtagatatataataatga |
5564155 |
T |
|
| Q |
301 |
tcgttgattaaaaatgctagcatgatggaatgtttgaaagcggcagcatttgtcaataaaggaagccattccaacaactggtcacacaatattgatgaag |
400 |
Q |
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| T |
5564154 |
tcgttgattaaaaatgctagcatgatggaatgtttgaaagcggcagcatttgtcaataaaggaagccattccaacaactggtcacacaatattgatgaag |
5564055 |
T |
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| Q |
401 |
caatacataggaaccaaaatgttgttgacaaaatgtccaaattaaatgcttttgaaaaataacatcacagctatggaaatccaaatttgtaacctcttga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5564054 |
caatacataggaaccaaaatgttgttgacaaaatgtccaaattaaatgcttttgaaaaataacatcacagatatggaaatccaaatttgtaacctcttga |
5563955 |
T |
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| Q |
501 |
atattcacagaccattttcatattcacattatgttccaacaacacgttct |
550 |
Q |
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| T |
5563954 |
atattcacagaccattttcatattcacattatgttccaacaacacgttct |
5563905 |
T |
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