View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_60 (Length: 250)
Name: NF19787_low_60
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 31943943 - 31943773
Alignment:
| Q |
76 |
tcatgtatattttctaaaagaatgaatttatttttattgttttgttagctttttgttctttatctcccacttgtagaattgaactcaaggtctttccaaa |
175 |
Q |
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| T |
31943943 |
tcatgcatattttcttaaagaatgaatttatttttattgttttgttagctttttgttctttatctacactttgtagaattgaactcaaggtctttccaaa |
31943844 |
T |
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| Q |
176 |
aattcttttctagttatttactgggatctggatcctctattgctcatttccttctgccatctctgctgctc |
246 |
Q |
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| T |
31943843 |
aactcttttctagttatttaccgggatctggatcctctatttctcatttccttctgccatctattctgctc |
31943773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 15121398 - 15121472
Alignment:
| Q |
96 |
aatgaatttatttttattgttttgttagctttttgttctttatctcccacttgtagaattgaactcaaggtctttc |
171 |
Q |
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| T |
15121398 |
aatgagtttattttgattgctttcttagctctttgttctttatttcc-acttgtagaattgaactcaagatctttc |
15121472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24945381 - 24945328
Alignment:
| Q |
1 |
ccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactcca |
54 |
Q |
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| T |
24945381 |
ccaaataatccacaaccccttacggatcctcttatttctaccttcaatactcca |
24945328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9359472 - 9359526
Alignment:
| Q |
1 |
ccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactccaa |
55 |
Q |
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| T |
9359472 |
ccaaataatccacaaccccttgcgaatcttcttgtttctcccttcaatactccaa |
9359526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2308169 - 2308115
Alignment:
| Q |
1 |
ccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactccaa |
55 |
Q |
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|||||| |||||||| ||||| |||||| ||||||||||||||||| |||||||| |
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| T |
2308169 |
ccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaa |
2308115 |
T |
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