View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_65 (Length: 244)
Name: NF19787_low_65
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 4011364 - 4011566
Alignment:
| Q |
18 |
agttatggctttaacatttcagtagaacatatgtaaaagtaaaattactttgattgtaaactggttgcgaagttgtagtcatttctttctagtgttattt |
117 |
Q |
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| T |
4011364 |
agttatggctttaacatttcagtagaacatatgtaaaagtaaaattactttgattgtaaactggttgcgaagttgtagtcatttctttctagtgttattt |
4011463 |
T |
|
| Q |
118 |
agaatgacggcttaaatacaatttttgtctctcgttttctcaaattcacgactttgatactccgatttatttttcacgaatttgctccctacacaatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4011464 |
agaatgacggcttaaatacaatttttgtctctcgttttctcaaattcacgactttgatactccgatttatttttcacgaatttggtccctacacaatgta |
4011563 |
T |
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| Q |
218 |
cac |
220 |
Q |
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||| |
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| T |
4011564 |
cac |
4011566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 13977837 - 13977635
Alignment:
| Q |
18 |
agttatggctttaacatttcagtagaacatatgtaaaagtaaaattactttgattgtaaactggttgcgaagttgtagtcatttctttctagtgttattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13977837 |
agttatggctttaacatttcagtagaacatatgtaaaagtaaaattactttgattgtaaactggttgcgaagttgtagtcatttctttctagtgttattt |
13977738 |
T |
|
| Q |
118 |
agaatgacggcttaaatacaatttttgtctctcgttttctcaaattcacgactttgatactccgatttatttttcacgaatttgctccctacacaatgta |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
13977737 |
agaatgacggcttaaatacaatttttgtctctcgttttctcaaattcacgactttgatactccgatttatttttcacgaatttggtccctacacaatgca |
13977638 |
T |
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| Q |
218 |
cac |
220 |
Q |
| |
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||| |
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| T |
13977637 |
cac |
13977635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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