View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19787_low_67 (Length: 243)
Name: NF19787_low_67
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 29085542 - 29085400
Alignment:
| Q |
93 |
aaattagaatctaattagtaattgaaaagaaaatatagtagtcaggaatgaaaagagggaacaaagtagacatcacaatatttgattatactttgttcac |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29085542 |
aaattagaatctaattagtaattgaaaagaaaatatagtagtaaggaatgaaaagagggaacaaagtagacatcacaatatttgattatactttgttcac |
29085443 |
T |
|
| Q |
193 |
cttagagctcttcaatatttgataaaactttgttcaccctttg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29085442 |
cttagagctcttcaatatttgataaaactttgttcaccctttg |
29085400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University