View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_70 (Length: 239)
Name: NF19787_low_70
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 36934707 - 36934529
Alignment:
| Q |
13 |
tcgttgaaactccatataccaagagatatgctttactaagcaaatcaatttgattgtcaaattcgcaacattttggaaggatctcagtgacctctgaggg |
112 |
Q |
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| T |
36934707 |
tcgttgaaactccatataccaagagatatgctttactaagcaaatcaatttgattgtcaaatttgcaacattctggaaggatctcaatgacctctgaggg |
36934608 |
T |
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| Q |
113 |
ttgaatttcaagttcagactcctcatcactactaacattcctccttgagtcttcatcttgcaatggttccgccaaaaat |
191 |
Q |
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| T |
36934607 |
ttgaatttcaagttcaggctccttatcactactaacattccttgataaggcttcatcttgcaatggttctgcgaaaaat |
36934529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 36952173 - 36952032
Alignment:
| Q |
13 |
tcgttgaaactccatataccaagagatatgctttactaagcaaatcaatttgattgtcaaattcgcaacattttggaaggatctcagtgacctctgaggg |
112 |
Q |
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| T |
36952173 |
tcgttgaaaccccataaaccaagttgtatgcttcactaatcaaattaatttgattatcaaattcgcaacagtttggaaggatctcagttacttctaaggg |
36952074 |
T |
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| Q |
113 |
ttgaatttcaagttcagactcctcatcactactaacattcct |
154 |
Q |
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| T |
36952073 |
ttcaatttcatatccaggttccttataactactaacattcct |
36952032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 36946268 - 36946161
Alignment:
| Q |
13 |
tcgttgaaactccatataccaagagatatgctttactaagcaaatcaatttgattgtcaaattcgcaacattttggaaggatctcagtgacctctgaggg |
112 |
Q |
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| T |
36946268 |
tcgttgaacctccatacaccaagtgatatgcttcactaagcaaattaacttgattgtcaacttcccaa------ggaatgatctcagtgacttctgaggg |
36946175 |
T |
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| Q |
113 |
ttgaatttcaagtt |
126 |
Q |
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| T |
36946174 |
ttcaatatcaagtt |
36946161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 36963591 - 36963530
Alignment:
| Q |
13 |
tcgttgaaactccatataccaagagatatgctttactaagcaaatcaatttgattgtcaaat |
74 |
Q |
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| T |
36963591 |
tcgttgaacctccatacaccaagtgatatgcttcactgagcaaattaacttgattgtcaaat |
36963530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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