View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_71 (Length: 238)

Name: NF19787_low_71
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_71
NF19787_low_71
[»] chr4 (7 HSPs)
chr4 (1-145)||(21151425-21151569)
chr4 (16-140)||(21146831-21146953)
chr4 (16-145)||(21126735-21126859)
chr4 (177-222)||(21151354-21151399)
chr4 (52-136)||(21116957-21117039)
chr4 (188-222)||(21126626-21126660)
chr4 (188-222)||(21146716-21146750)
[»] chr2 (3 HSPs)
chr2 (31-95)||(40849313-40849377)
chr2 (31-95)||(40843456-40843520)
chr2 (31-95)||(40838742-40838806)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 21151569 - 21151425
Alignment:
Q  1 tagttaagttttccttgcatccagtttaccaacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattgcacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21151569 tagttaagttttccttgcatccagtttaccaacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattgcacac 21151470  T
Q  101 aacacataaataaaagtaaccataaatagaatcaacaatgccaca 145  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  21151469 aacacataaataaatgtaaccataaatagaatcaacaatgccaca 21151425  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 21146953 - 21146831
Alignment:
Q  16 tgcatccagtttaccaacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattgcacacaacacataaataaaa 115  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| ||  ||||||||| ||  ||||| |||||||||||||    
T  21146953 tgcatccagtttgccaacatctgaagtgcagcttttggttgatccatagggaccatatgtcctgccccattcacctgtt--acacatcacataaataaaa 21146856  T
Q  116 gtaaccataaatagaatcaacaatg 140  Q
     |||||| ||||  |||||||||||    
T  21146855 ttaaccaaaaattaaatcaacaatg 21146831  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 21126859 - 21126735
Alignment:
Q  16 tgcatccagtttaccaacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattgcacacaacacataaataaaa 115  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||| ||  |||||||||       ||| |||||||||||||    
T  21126859 tgcatccagtttgccaacatctgaagtgcagcttttggttgatccatagggaccaaatgtcctgccccattcacct-----ggacatcacataaataaaa 21126765  T
Q  116 gtaaccataaatagaatcaacaatgccaca 145  Q
     |||||| |||| |||||||||||| ||||    
T  21126764 ttaaccaaaaattgaatcaacaatgtcaca 21126735  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 21151399 - 21151354
Alignment:
Q  177 aatactaactttaactaacctttagaaaagaaagaggtccataact 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21151399 aatactaactttaactaacctttagaaaagaaagaggtccataact 21151354  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 21117039 - 21116957
Alignment:
Q  52 ggttgatccatagggaccatatgtccagcatcattcacctattgcacacaacacataaataaaagtaaccataaatagaatcaac 136  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||  |||||||||| |||| ||||||| | |||| ||||||||    
T  21117039 ggttgatccataggaaccatatgtccagcaccatacacctattg--cacaacacatgaatataagtaacaaaaaatggaatcaac 21116957  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 21126660 - 21126626
Alignment:
Q  188 taactaacctttagaaaagaaagaggtccataact 222  Q
    |||||||||||||||||||| ||||||||||||||    
T  21126660 taactaacctttagaaaagagagaggtccataact 21126626  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 21146750 - 21146716
Alignment:
Q  188 taactaacctttagaaaagaaagaggtccataact 222  Q
    |||||||||||||||||||| ||||||||||||||    
T  21146750 taactaacctttagaaaagagagaggtccataact 21146716  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 40849313 - 40849377
Alignment:
Q  31 aacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattg 95  Q
    |||||||| | |||||||||||||||||||||||| ||||| || ||||| || |||||||||||    
T  40849313 aacatctgaagtgcagcttttggttgatccataggaaccatgtgaccagcctctttcacctattg 40849377  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 40843456 - 40843520
Alignment:
Q  31 aacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattg 95  Q
    |||||||| | |||| ||||||||||||||||||| ||||| || ||||| || |||||||||||    
T  40843456 aacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcacctattg 40843520  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 40838742 - 40838806
Alignment:
Q  31 aacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattg 95  Q
    |||||||| | |||| ||||||||||||||||||| ||||| || ||||| || |||| ||||||    
T  40838742 aacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcaactattg 40838806  T

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