View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_73 (Length: 236)
Name: NF19787_low_73
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52473113 - 52473333
Alignment:
| Q |
1 |
ctatttgactgactccatacaaggtttagtcttgacagaaaacccaggtctaatcttggcagaaaccccttttttggaacaacctgttgtatggaaatct |
100 |
Q |
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| T |
52473113 |
ctatttgaatgactccatacaaggtttagtcttgacagaaaacccaggtctaatcttggcagaaaccccttttttggaacaacctgttgtatggaaatct |
52473212 |
T |
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| Q |
101 |
acaccgttggaaaaaagtttgtcccagaaacataataaggattatttcaccaaatcattgctgttaactgaacaaataataagaaggcctccaaaggttt |
200 |
Q |
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| T |
52473213 |
acaccgttggaaaaaagtttgtcccagaaacataataaggattatttcaccaaatcattgctgttaacggaacaaataataagaaggcctccaaaggttt |
52473312 |
T |
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| Q |
201 |
gattctggtcttggttcaatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
52473313 |
gattctggtcttggttcaatc |
52473333 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 1005115 - 1005157
Alignment:
| Q |
170 |
gaacaaataataagaaggcctccaaaggtttgattctggtctt |
212 |
Q |
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| T |
1005115 |
gaacaaatgataagaaggcctccaaaggtttgattctagtctt |
1005157 |
T |
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