View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_77 (Length: 229)
Name: NF19787_low_77
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 24415529 - 24415726
Alignment:
| Q |
18 |
aatccttaataatgcttactttatttggggttgtacattggttcatgtaatgtaatagtggtggtttcagagttgttagatagggattaagatatttaag |
117 |
Q |
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| T |
24415529 |
aatccttaataatgcttactttatttggggttgtacattggttcatgtaatgtaatagtggtggtttcagagttgttagatagggattaagatatttaag |
24415628 |
T |
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| Q |
118 |
ggatggattatactactggccatttaataatatacaagttgattgatgcataactcccttcaaagaagtgagttccaacaaatttgtagtttgatatt |
215 |
Q |
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| T |
24415629 |
ggatggattatactactggccatttaataatatacaagttgattgatgcataactcccttcaaagaagtgagttccaacaaatttgtagtttgatatt |
24415726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 24418992 - 24418840
Alignment:
| Q |
22 |
cttaataatgcttactttatttggggttgtacattggttcatgtaatgtaatagtggtggtttcagagttgttagatagggattaagatatttaagggat |
121 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
24418992 |
cttagtaatgcttactttatttggggctgtacgttggttcatgtaatgtc-tac-ggt--tttcagagttgttagataggcattaagatatttaagggat |
24418897 |
T |
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| Q |
122 |
ggattatactactggccatttaataatatacaagttgattgatgcataactcccttc |
178 |
Q |
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| T |
24418896 |
ggattatactacaagccatttaatcatatacaagttgattgatgcataactcgcttc |
24418840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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