View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_78 (Length: 229)

Name: NF19787_low_78
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_78
NF19787_low_78
[»] chr1 (3 HSPs)
chr1 (1-219)||(15885621-15885839)
chr1 (1-219)||(12610028-12610246)
chr1 (1-219)||(12637124-12637339)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-148)||(62276-62423)
[»] chr3 (8 HSPs)
chr3 (4-149)||(23039167-23039312)
chr3 (12-101)||(22972085-22972174)
chr3 (12-90)||(22946538-22946616)
chr3 (4-149)||(23146046-23146191)
chr3 (4-107)||(23032825-23032928)
chr3 (4-124)||(22941328-22941448)
chr3 (4-149)||(23024398-23024543)
chr3 (52-149)||(23148932-23149029)
[»] chr6 (1 HSPs)
chr6 (52-149)||(21779987-21780084)
[»] scaffold0554 (1 HSPs)
scaffold0554 (49-145)||(6487-6583)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15885839 - 15885621
Alignment:
Q  1 catgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggt 100  Q
    |||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  15885839 catgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaagaggagctggagggt 15885740  T
Q  101 gtaaccttaacgtctctttcacaattgacttcaaatatttgagttcattaagaaagttctcatcaacaactccttttgcgttgaacatttctctaacttc 200  Q
    |||||||||| ||||||||||||| ||||||||||||  |||| ||||||| | |||||||| |||||| |||||||| ||||||||||||||| |||||    
T  15885739 gtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaacatttctcttacttc 15885640  T
Q  201 agtttgtgctttcttcatc 219  Q
    |  ||||||||||||||||    
T  15885639 atcttgtgctttcttcatc 15885621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12610028 - 12610246
Alignment:
Q  1 catgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggt 100  Q
    |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||| |||||||||| ||||||| |    
T  12610028 catgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacctggaggat 12610127  T
Q  101 gtaaccttaacgtctctttcacaattgacttcaaatatttgagttcattaagaaagttctcatcaacaactccttttgcgttgaacatttctctaacttc 200  Q
    |||||||||| ||||||||||||| |||||| |||||  |||||||||| | | | || || ||||||  ||||||   |||||| || ||||| || ||    
T  12610128 gtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatatctcttacctc 12610227  T
Q  201 agtttgtgctttcttcatc 219  Q
    |  ||||||||||||||||    
T  12610228 atcttgtgctttcttcatc 12610246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12637124 - 12637339
Alignment:
Q  1 catgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggt 100  Q
    |||||||| ||||||||||||||||||  |||||||||||| || ||||| ||||||||||||  |||||||||   || ||||||||||| ||||||||    
T  12637124 catgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagttggagggt 12637220  T
Q  101 gtaaccttaacgtctctttcacaattgacttcaaatatttgagttcattaagaaagttctcatcaacaactccttttgcgttgaacatttctctaacttc 200  Q
    |||||||||  ||||||||||| | | |||||||||||| ||||||||| | | |||| ||| |||||  ||||||   |||||| |||| ||| |||||    
T  12637221 gtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctttcttgttgaatatttttctcacttc 12637320  T
Q  201 agtttgtgctttcttcatc 219  Q
    |  ||||||||||||||||    
T  12637321 atattgtgctttcttcatc 12637339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 62276 - 62423
Alignment:
Q  1 catgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggt 100  Q
    |||||||| ||||||| |||  |||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||| | |||| ||||    
T  62276 catgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttggaagtaaaagagcacctggggggt 62375  T
Q  101 gtaaccttaacgtctctttcacaattgacttcaaatatttgagttcat 148  Q
    ||||||| |  ||||||||||||||||||||||  |||||||||||||    
T  62376 gtaacctcagggtctctttcacaattgacttcacgtatttgagttcat 62423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 23039167 - 23039312
Alignment:
Q  4 gcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgta 103  Q
    ||||| |||||||||||||| || || ||||| ||||| ||||  |||||||||| |||   |||||||||||| |  |||||||| | |||||||||||    
T  23039167 gcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggcagcaaaagaggtgttggagggtgta 23039266  T
Q  104 accttaacgtctctttcacaattgacttcaaatatttgagttcatt 149  Q
    |||| |  || ||||| |||| |||||||||||| |||||||||||    
T  23039267 acctcagggtttctttgacaactgacttcaaataattgagttcatt 23039312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 22972085 - 22972174
Alignment:
Q  12 tatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtg 101  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||| ||||||  |||  | ||||| |||||||||||| | ||||||||    
T  22972085 tatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttgtccacacacccttggtactaaaagaggaccaggagggtg 22972174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 22946538 - 22946616
Alignment:
Q  12 tatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagga 90  Q
    ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||| |||  | || |||| ||||||||||    
T  22946538 tatcaccctactattgattggtatgtgataaccatcaatctcacatgcttgtgcacacaccctaggaattaaaagagga 22946616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 23146046 - 23146191
Alignment:
Q  4 gcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgta 103  Q
    ||||| |||| ||||||| | || || ||||| ||||| ||||  || |||||| ||||  |||||||||| || |  |||||||| |||||||||||||    
T  23146046 gcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctcggtaacaaaagaggtgctggagggtgta 23146145  T
Q  104 accttaacgtctctttcacaattgacttcaaatatttgagttcatt 149  Q
     |||||| || ||||| |||| | | |||||||| |||||||||||    
T  23146146 gccttaaggtttctttgacaactaatttcaaataattgagttcatt 23146191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 23032825 - 23032928
Alignment:
Q  4 gcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgta 103  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||||  ||||||||||||||    ||||||||||| |  ||||||||  ||| |||||| |    
T  23032825 gcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaagaggtactgtagggtgga 23032924  T
Q  104 acct 107  Q
    ||||    
T  23032925 acct 23032928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 22941448 - 22941328
Alignment:
Q  4 gcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgta 103  Q
    |||||||||||||| || ||||| |  ||||||| ||| ||||  || ||||||||||||  ||||||||||||||  ||||  | ||| |||||||| |    
T  22941448 gcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctcttggaagcaaaaatgcagcaggagggtgca 22941349  T
Q  104 accttaacgtctctttcacaa 124  Q
    | || || |||||||||||||    
T  22941348 atctcaatgtctctttcacaa 22941328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 23024398 - 23024543
Alignment:
Q  4 gcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgta 103  Q
    ||||| |||||||||||| | ||  |||| || | ||| || || |||| ||||| ||| | ||||||||| || | |||||| || || ||||||||||    
T  23024398 gcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaaaagtggtgccggagggtgta 23024497  T
Q  104 accttaacgtctctttcacaattgacttcaaatatttgagttcatt 149  Q
    |||| |  || ||||| |||||||| |||||||| || ||||||||    
T  23024498 acctcagggtttctttgacaattgatttcaaataattaagttcatt 23024543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 23148932 - 23149029
Alignment:
Q  52 tcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatt 149  Q
    ||||| |||||  |||||||||| || |  |||||||| || |||||||||| |||||| || ||||| |||| | | |||||||| |||||||||||    
T  23148932 tcacacgcttgactacattctctcggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcatt 23149029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 21779987 - 21780084
Alignment:
Q  52 tcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatt 149  Q
    |||||||||||  |||||||||| || |  |||||||| ||||||||||||| |||||| || ||||| |||| ||| |||||||| |||||||||||    
T  21779987 tcacatgcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcatt 21780084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 6583 - 6487
Alignment:
Q  49 atctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagtt 145  Q
    |||||||||||||    |||||||||||| |  |||||||| ||||||||||||||||| |  || ||||| || | ||| |||||||| |||||||    
T  6583 atctcacatgctttaccacattctcttggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtt 6487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University