View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19787_low_79 (Length: 227)
Name: NF19787_low_79
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_79 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26440613 - 26440833
Alignment:
| Q |
1 |
tcccctctctacgatgttgctatgggtgaggccgtagcttttcatacgatgttgaagtggatggaagatcttcactatgataatgttgactttgctttag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26440613 |
tcccctctctacgatgttgctatgggtgaggccgtagcttttcatacggcgttgaagtggatggaagatcttcactatgataatgttgactttgctttag |
26440712 |
T |
|
| Q |
101 |
attccaagatagtggttgatcattttcgatcttatgtagaggatgattgtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagttt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26440713 |
attccaagatagtggttgatcattttcgatcttatgtagaagatgatagtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagttt |
26440812 |
T |
|
| Q |
201 |
ttagaactctcatgtcgagtt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
26440813 |
ttagaactctcatgtcgagtt |
26440833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 7250926 - 7251133
Alignment:
| Q |
14 |
atgttgctatgggtgaggccgtagcttttcatacgatgttgaagtggatggaagatcttcactatgataatgttgactttgctttagattccaagatagt |
113 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||| |||||| ||||||| || ||||||||||||||||| ||||||||||||||||| || ||||| |
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|
| T |
7250926 |
atgttgttgtgggtgaggccgtaggctttcatacggcgttgaaatggatggcggaacttcactatgataatgtcgactttgctttagattctaacatagt |
7251025 |
T |
|
| Q |
114 |
ggttgatcattttcgatcttatgtagaggatgattgtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagtttttagaactctcat |
213 |
Q |
| |
|
||||||||||||||| |||| | ||||| |||| |||| |||||||||| ||||||||||||| ||| |||||| | | ||||||| |||||||| || |
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| T |
7251026 |
ggttgatcattttcggtcttctttagagaatgacaatgagtttggatgtattatgcatgcttgtaaacaattgtttcagattagttttcagaactcttat |
7251125 |
T |
|
| Q |
214 |
gtcgagtt |
221 |
Q |
| |
|
|||||||| |
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|
| T |
7251126 |
gtcgagtt |
7251133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44840161 - 44839941
Alignment:
| Q |
1 |
tcccctctctacgatgttgctatgggtgaggccgtagcttttcatacgatgttgaagtggatggaagatcttcactatgataatgttgactttgctttag |
100 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
44840161 |
tcccctctctgcgatgttgatgtgggtgaggccgtagcttttcatacggcgttgaagtggatgacagatcttcactatgataatgttgactttgctttag |
44840062 |
T |
|
| Q |
101 |
attccaagatagtggttgatcattttcgatcttatgtagaggatgattgtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44840061 |
attccaagatagtggttgatcattttcgatcttatgtagaggatgatagtgagcttggatgtatcatgcatgcttgtagacaattgtttgacaatagttt |
44839962 |
T |
|
| Q |
201 |
ttagaactctcatgtcgagtt |
221 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
44839961 |
tcagaactctcatgtcgagtt |
44839941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 2536774 - 2536566
Alignment:
| Q |
13 |
gatgttgctatgggtgaggccgtagcttttcatacgatgttgaagtggatggaagatcttcactatgataatgttgactttgctttagattccaagatag |
112 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |||||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
2536774 |
gatgttgctgtgggtgaggccgtaggttttcatacgaagttgaaatggatggcggagcttcactatgataatgtcgactttgctttagattccaagatag |
2536675 |
T |
|
| Q |
113 |
tggttgatcattttcgatcttatgtagaggatgattgtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagtttttagaactctca |
212 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||| |||||||||| ||| ||| ||||| ||| ||||||| | ||||||| |||||||||| |
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|
| T |
2536674 |
tggttgatcattttcggtcttccttagaggatgacagtgagtttggatgtattatgtatgattgtaaacaactgtttgagattagttttcagaactctca |
2536575 |
T |
|
| Q |
213 |
tgtcgagtt |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
2536574 |
tgtcgagtt |
2536566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 51080841 - 51080755
Alignment:
| Q |
136 |
gtagaggatgattgtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagtttttagaactctcatgtcgagttt |
222 |
Q |
| |
|
||||| |||||| |||| ||||| ||||| || ||| ||||||||||||||| | |||||||| | |||||||||||||||||| |
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|
| T |
51080841 |
gtagatgatgatagtgaacttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagttt |
51080755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21118202 - 21118422
Alignment:
| Q |
1 |
tcccctctctacgatgttgctatgggtgaggccgtagcttttcatacgatgttgaagtggatggaagatcttcactatgataatgttgactttgctttag |
100 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
21118202 |
tcccctctctgtgatgtttctgtgggtgaggccgtatcttttcatacggcgttgaagtggatggtagatcttcactatgataatgttgactttgctttag |
21118301 |
T |
|
| Q |
101 |
attccaagatagtggttgatcattttcgatcttatgtagaggatgattgtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagttt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21118302 |
attccaagatagtggttgatcatttccgatcttatgtagaggatgatagtgagcttggatgtatcatgcatgcttgtagacagttgtttgacaatagttt |
21118401 |
T |
|
| Q |
201 |
ttagaactctcatgtcgagtt |
221 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
21118402 |
tcagaactctcatgtcgagtt |
21118422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 12714997 - 12714937
Alignment:
| Q |
155 |
ttggatgtatcatgcatgcttgtagacagttgtttgacaatagtttttagaactctcatgt |
215 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
12714997 |
ttggatgtattatatatgcttgtagattgttgtttgacaatagttttcagaactctcatgt |
12714937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 12776228 - 12776168
Alignment:
| Q |
155 |
ttggatgtatcatgcatgcttgtagacagttgtttgacaatagtttttagaactctcatgt |
215 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
12776228 |
ttggatgtattatatatgcttgtagatttttgtttgacaatagttttcagaactctcatgt |
12776168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 34500 - 34549
Alignment:
| Q |
173 |
cttgtagacagttgtttgacaatagtttttagaactctcatgtcgagttt |
222 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||||||||||||||| |
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|
| T |
34500 |
cttgtagacaactgtttatcaatagttttcagaactctcatgtcgagttt |
34549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 34905550 - 34905591
Alignment:
| Q |
169 |
catgcttgtagacagttgtttgacaatagtttttagaactct |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
34905550 |
catgcttgtagacagttgtttgttaatagttttcagaactct |
34905591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 1394112 - 1394152
Alignment:
| Q |
181 |
cagttgtttgacaatagtttttagaactctcatgtcgagtt |
221 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1394112 |
cagttgtttgacaatagttttcagaactctcatgtcgagtt |
1394152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 19316026 - 19315974
Alignment:
| Q |
169 |
catgcttgtagacagttgtttgacaatagtttttagaactctcatgtcgagtt |
221 |
Q |
| |
|
|||||||||||| ||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
19316026 |
catgcttgtagatagttgtttgttaacagttttcagaactctcatgtcgagtt |
19315974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 36684871 - 36684932
Alignment:
| Q |
160 |
tgtatcatgcatgcttgtagacagttgtttgacaatagtttttagaactctcatgtcgagtt |
221 |
Q |
| |
|
|||||||| || ||||||||||||||||| || || |||| ||||||||||||||||||| |
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|
| T |
36684871 |
tgtatcattcaggcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagtt |
36684932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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