View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19787_low_83 (Length: 206)

Name: NF19787_low_83
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19787_low_83
NF19787_low_83
[»] chr1 (3 HSPs)
chr1 (20-194)||(12609731-12609905)
chr1 (18-194)||(15885962-15886138)
chr1 (23-194)||(12636830-12637001)
[»] scaffold0059 (1 HSPs)
scaffold0059 (21-193)||(61980-62152)
[»] chr3 (11 HSPs)
chr3 (37-174)||(23016905-23017042)
chr3 (75-194)||(22941574-22941693)
chr3 (26-132)||(22971783-22971889)
chr3 (62-195)||(23024140-23024273)
chr3 (94-194)||(22916874-22916974)
chr3 (60-194)||(23036036-23036170)
chr3 (61-194)||(23145787-23145920)
chr3 (61-194)||(23148625-23148758)
chr3 (60-160)||(22946270-22946370)
chr3 (114-174)||(22831755-22831815)
chr3 (98-194)||(23038945-23039041)
[»] scaffold0554 (1 HSPs)
scaffold0554 (38-172)||(6776-6910)
[»] chr5 (2 HSPs)
chr5 (95-129)||(41317195-41317229)
chr5 (96-129)||(41329236-41329269)
[»] chr8 (1 HSPs)
chr8 (114-174)||(5594250-5594310)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 12609731 - 12609905
Alignment:
Q  20 gtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaat 119  Q
    ||||||||||| |||||||||||||||||||||| |||  |||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||    
T  12609731 gtaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaat 12609830  T
Q  120 caaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttc 194  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  12609831 caaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttc 12609905  T

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Target: chr1; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 15886138 - 15885962
Alignment:
Q  18 cagtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctcca 117  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||| |||||||| || ||| |||||||| |||||| ||||||||||||    
T  15886138 cagtaggtatcaagtacaagtcatcttttcttttgacggtcgctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcgggaagcctcca 15886039  T
Q  118 atcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttc 194  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| || ||||||||||    
T  15886038 atcaaagtgatacaacaacaatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttc 15885962  T

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Target: chr1; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 12636830 - 12637001
Alignment:
Q  23 ggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaa 122  Q
    ||||||||||||||||||  ||||||||| |   || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12636830 ggtatcaagtacaagtcactttttcttttaacattagccccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaa 12636929  T
Q  123 agtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttc 194  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12636930 agtgatataacaacaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttc 12637001  T

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Target: scaffold0059 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 61980 - 62152
Alignment:
Q  21 taggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatc 120  Q
    ||||||||||||||||||||||||||||||| |  || |||||||||| ||||||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  61980 taggtatcaagtacaagtcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatc 62079  T
Q  121 aaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattctt 193  Q
    |||||||||||||| || || |||||||| ||||| | | |||||||||||| |  ||||||| |||||||||    
T  62080 aaagtgatacaacaacattgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctt 62152  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 23016905 - 23017042
Alignment:
Q  37 gtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatc 136  Q
    ||||||||||||  | || || |||||||||||||||||||||||||  ||  ||| ||| ||||||  ||||||| |||| ||||| |||||||||| |    
T  23016905 gtcatcttttctcctcattgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaac 23017004  T
Q  137 aatgaaagtgccaactcaacatttatcaaaccaaatgt 174  Q
    |  | ||| ||||||||||||||| ||||||| |||||    
T  23017005 atcgcaagggccaactcaacatttctcaaaccgaatgt 23017042  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 22941693 - 22941574
Alignment:
Q  75 tcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgt 174  Q
    |||||||||||||  ||  ||||||  ||||||||||  |||||||||||||||||| || ||||| |||||   |||||||||| | ||||||||||||    
T  22941693 tcatgtccaaatcttcatttttcatctcattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgt 22941594  T
Q  175 tatgcctggacatattcttc 194  Q
    ||  || ||||| |||||||    
T  22941593 tactcccggacacattcttc 22941574  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 22971783 - 22971889
Alignment:
Q  26 atcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagt 125  Q
    ||||| |||| ||||||||||||| | |  | | |||||||| |||||||||| ||||||||| ||| ||||||||||   |||||| ||||||||||||    
T  22971783 atcaaatacatgtcatcttttcttataacagaagctccaaatagctcagtcatatccaaatcctcacatttcattccaccaggaagcttccaatcaaagt 22971882  T
Q  126 gatacaa 132  Q
    || ||||    
T  22971883 gagacaa 22971889  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 23024140 - 23024273
Alignment:
Q  62 ccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacattta 161  Q
    ||||||| ||||||||||||||| ||  ||| ||| |||||||| |||||| |||||||||| || ||||||| |  || ||| || | ||||||| ||     
T  23024140 ccaaatttctcagtcatgtccaattcttcacttttgattccattaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttc 23024239  T
Q  162 tcaaaccaaatgttatgcctggacatattcttcg 195  Q
     |||||||||| |  | |||||||||||||||||    
T  23024240 gcaaaccaaatatgctccctggacatattcttcg 23024273  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 22916974 - 22916874
Alignment:
Q  94 tttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattctt 193  Q
    ||||||| ||||||||||  |||||||||||||||||| || ||||| |||||  ||||||| ||| | ||| |||||||| |  |||||||| ||||||    
T  22916974 tttcattgcattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgaaaactcaatattgaccaatccaaatgtgacccctggacacattctt 22916875  T
Q  194 c 194  Q
    |    
T  22916874 c 22916874  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 23036036 - 23036170
Alignment:
Q  60 ctccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatt 159  Q
    |||||||||  |||||||||||||| ||  ||| ||| |||||| | |||||| |||| ||||| |||||||||| ||  | ||| ||||  |||| |||    
T  23036036 ctccaaattcgtcagtcatgtccaattcttcacttttgattccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatt 23036135  T
Q  160 tatcaaaccaaatgttatgcctggacatattcttc 194  Q
    | |||||||||||||  | ||||| ||||||||||    
T  23036136 tctcaaaccaaatgtgctccctgggcatattcttc 23036170  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 23145787 - 23145920
Alignment:
Q  61 tccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacattt 160  Q
    |||||||| ||||||||| ||||  ||  ||||| | |||||| | |||||| |||| ||||| |||||||| | || || |||  ||| ||||| ||||    
T  23145787 tccaaattcctcagtcatatccatttcttcacctgttattccactaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatattt 23145886  T
Q  161 atcaaaccaaatgttatgcctggacatattcttc 194  Q
     |||||||||||||  | ||||||||||||||||    
T  23145887 gtcaaaccaaatgtgctccctggacatattcttc 23145920  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 23148625 - 23148758
Alignment:
Q  61 tccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacattt 160  Q
    |||||||| ||||||||| ||||  ||  ||||| | |||||| |||||||| |||| ||||| |||||||||| || ||  || |||| ||||| ||||    
T  23148625 tccaaattcctcagtcatatccatttcttcacctgttattccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatattt 23148724  T
Q  161 atcaaaccaaatgttatgcctggacatattcttc 194  Q
     ||||||||||| |  | ||||| ||||||||||    
T  23148725 ctcaaaccaaatatgctccctgggcatattcttc 23148758  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 22946270 - 22946370
Alignment:
Q  60 ctccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatt 159  Q
    |||||||| |||||||||||||||||||| ||  ||||||||||   |||||  |||||||||||||  |||| | ||| | ||||| || |||||||||    
T  22946270 ctccaaatagctcagtcatgtccaaatcctcatttttcattccaccaggaagtttccaatcaaagtggcacaataacaaagcaagtgtcagctcaacatt 22946369  T
Q  160 t 160  Q
    |    
T  22946370 t 22946370  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 22831755 - 22831815
Alignment:
Q  114 tccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgt 174  Q
    |||||||||||||||||| || ||||| |||||   |||||||||| | ||||||||||||    
T  22831755 tccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgt 22831815  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 23038945 - 23039041
Alignment:
Q  98 attccattgggaagcctccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttc 194  Q
    |||||| | |||||| |||| ||||| |||||||||| || || ||| |||| ||||| | || |||||||||||||  | ||||| ||||||||||    
T  23038945 attccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttc 23039041  T

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Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 6910 - 6776
Alignment:
Q  38 tcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatccccacctttcattccattgggaagcctccaatcaaagtgatacaacatca 137  Q
    ||||| |||||| | || ||||||||||||| ||| ||||||||||| ||  ||| ||| ||||||   |||||| |||| ||||| |||||||||| ||    
T  6910 tcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttttgattccacatggaagcttccagtcaaaatgatacaacaaca 6811  T
Q  138 atgaaagtgccaactcaacatttatcaaaccaaat 172  Q
      | ||| |||| |||||||||| |||||||||||    
T  6810 tcgcaagcgccagctcaacatttctcaaaccaaat 6776  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 41317229 - 41317195
Alignment:
Q  95 ttcattccattgggaagcctccaatcaaagtgata 129  Q
    |||||||||||||||||| ||||||||||||||||    
T  41317229 ttcattccattgggaagcttccaatcaaagtgata 41317195  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 41329269 - 41329236
Alignment:
Q  96 tcattccattgggaagcctccaatcaaagtgata 129  Q
    ||||||||||||||||| ||||||||||||||||    
T  41329269 tcattccattgggaagcttccaatcaaagtgata 41329236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 5594310 - 5594250
Alignment:
Q  114 tccaatcaaagtgatacaacatcaatgaaagtgccaactcaacatttatcaaaccaaatgt 174  Q
    |||||||||||||||||| || ||||| |||||   |||||||||| | ||||||||||||    
T  5594310 tccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgt 5594250  T

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