View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_85 (Length: 204)
Name: NF19787_low_85
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_85 |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 35848664 - 35848479
Alignment:
| Q |
4 |
ctatatgttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggatta |
103 |
Q |
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|||||| ||||||| ||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35848664 |
ctatatattaattacggaagtataactgttatgacagatcatcacttgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggatta |
35848565 |
T |
|
| Q |
104 |
tgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataact |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
35848564 |
tgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggatacataact |
35848479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 35866335 - 35866150
Alignment:
| Q |
4 |
ctatatgttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggatta |
103 |
Q |
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|||||| ||||||| ||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35866335 |
ctatatattaattacggaagtataactgttatgacagatcatcacttgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggatta |
35866236 |
T |
|
| Q |
104 |
tgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataact |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
35866235 |
tgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggatacataact |
35866150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 35774883 - 35774698
Alignment:
| Q |
4 |
ctatatgttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggatta |
103 |
Q |
| |
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|||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
35774883 |
ctatatattaattatggaagtataactgttatgacaaatcatcacttgaaagaatttgcttggggaatagcaaatagtaaattaccttttttatggatat |
35774784 |
T |
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| Q |
104 |
tgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataact |
189 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
35774783 |
tgagaccagatgtagcaatgggtgaagagacttcaactttgccacaagattttctagatgaggttaaggatagaggatacataact |
35774698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 35754754 - 35754575
Alignment:
| Q |
10 |
gttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggattatgagac |
109 |
Q |
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||||||||||||||| || |||||||| || ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
35754754 |
gttaattatggaagtgtaactgttatgacagatcatcacttgaaagaatttgcttggggaatagcaaatagtaaattaccatttttatggataatgagac |
35754655 |
T |
|
| Q |
110 |
cagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataact |
189 |
Q |
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|||||||||||||||||||||| | |||| ||||||| ||||| ||||||||||| || | ||||||||||||||||||| |
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| T |
35754654 |
cagatgtagtaatgggtgaagaaatttcaactttgccacaagattttctagatgaagttaaggatagaggatacataact |
35754575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 35735917 - 35735808
Alignment:
| Q |
5 |
tatatgttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggattat |
104 |
Q |
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||||| |||||||||||||||||||||| ||| | | || || || |||||||||||||| |||||||||| |||||||||||||| ||||| | |
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| T |
35735917 |
tatatattaattatggaagtatagctgtgatgagtgagaaacattttaatgaatttgcttggggtttagcaaatagtaaattaccatttttatggataaa |
35735818 |
T |
|
| Q |
105 |
gagaccagat |
114 |
Q |
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||||||||| |
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| T |
35735817 |
tagaccagat |
35735808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 3208 - 3393
Alignment:
| Q |
4 |
ctatatgttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtggatta |
103 |
Q |
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|||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
3208 |
ctatatattaattatggaagtataactgttatgacaaatcatcacttgaaagaatttgcttggggaatagcaaatagtaaattaccttttttatggatat |
3307 |
T |
|
| Q |
104 |
tgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataact |
189 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| || | ||||| ||||||||||||| |
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| T |
3308 |
tgagaccagatgtagcaatgggtgaagagacttcaactttgccacaagagtttctagatgaagttaaggataaaggatacataact |
3393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 68 - 256
Alignment:
| Q |
1 |
gtcctatatgttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtgga |
100 |
Q |
| |
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|||||||||||||||||||||||| || |||||||| | |||| || |||||||||||||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
68 |
gtcctatatgttaattatggaagtgtaactgttatgactgatcaccacttgaaagaatttgcttggggaatagcaaatagtaaattgccatttttatgga |
167 |
T |
|
| Q |
101 |
ttatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataact |
189 |
Q |
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| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
168 |
taatgagaccagatgtagtaatgggtgtggaaacttcatctttgccacaagagtttctagatgaggtaaaagatagaggatacataact |
256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 68 - 256
Alignment:
| Q |
1 |
gtcctatatgttaattatggaagtatagctgttatggcaaatcatcaattgaaagaatttgcttggggaatagcaaatagcaaattaccatttttgtgga |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| | |||| || |||||||||||||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
68 |
gtcctatatgttaattatggaagtgtaactgttatgactgatcaccacttgaaagaatttgcttggggaatagcaaatagtaaattgccatttttatgga |
167 |
T |
|
| Q |
101 |
ttatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataact |
189 |
Q |
| |
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| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
168 |
taatgagaccagatgtagtaatgggtgtggaaacttcatctttgccacaagagtttctagatgaggtaaaagatagaggatacataact |
256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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