View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_low_9 (Length: 495)
Name: NF19787_low_9
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_low_9 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Original strand, 4012432 - 4012911
Alignment:
| Q |
16 |
atgatgatggaatctgttaagagactcacattggacgatataaggtctggaaatatgtatataagtgggagacatcggtcaccttaaaagtcggatttgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012432 |
atgatgatggaatctgttaagagactcacattggacgatataaggtctggaaatatgtatataagtgggagacatcggtcaccttaaaagtcggatttgt |
4012531 |
T |
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| Q |
116 |
agggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatgttacgcttcaaatgtctagtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012532 |
agggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatgttacgcttcaaatgtctagtc |
4012631 |
T |
|
| Q |
216 |
ctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtggaaggcatctatcatctttcaaaccagttttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
4012632 |
ctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtgggaggcatctgtcatctttcaaaccagttttg |
4012731 |
T |
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| Q |
316 |
tagaattgagttaagctcaatccaatggtgactgtctagccttgtaaattgtaatagcaagggactgtgttcgaatcaacgaaggaacagtttacatggc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
4012732 |
tagaattgagttaagctcaatccaatggtgactgtctatccttgtaaattgtaatagcaagggaccgtgttcgaatctacgaaggaacagtttacatggc |
4012831 |
T |
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| Q |
416 |
ctaagtgcctccccctattaattaaaaacaacatgattcacttcatatcaacaaaagagtatgaaaacctttcactctcc |
495 |
Q |
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| T |
4012832 |
ctaagtgcctccccctattaattaaaaacaacatgattcacttcatatcaataaaagagtatgaaaacctttcactctcc |
4012911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Complemental strand, 13976764 - 13976285
Alignment:
| Q |
16 |
atgatgatggaatctgttaagagactcacattggacgatataaggtctggaaatatgtatataagtgggagacatcggtcaccttaaaagtcggatttgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13976764 |
atgatgatggaatctgttaagagactcacattggacgatataaggtctggaaatatgtatataagtgggagacatcggtcaccttaaaagtcggatttgt |
13976665 |
T |
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| Q |
116 |
agggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatgttacgcttcaaatgtctagtc |
215 |
Q |
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| T |
13976664 |
agggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatgttacgcttcaaatgtctagtc |
13976565 |
T |
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| Q |
216 |
ctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtggaaggcatctatcatctttcaaaccagttttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
13976564 |
ctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtgggaggcatctgtcatctttcaaaccagttttg |
13976465 |
T |
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| Q |
316 |
tagaattgagttaagctcaatccaatggtgactgtctagccttgtaaattgtaatagcaagggactgtgttcgaatcaacgaaggaacagtttacatggc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
13976464 |
tagaattgagttaagctcaatccaatggtgactgtctaaccttgtaaattgtaatagcaagggacagtgttcgaatctacgaaggaacagtttacatggc |
13976365 |
T |
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| Q |
416 |
ctaagtgcctccccctattaattaaaaacaacatgattcacttcatatcaacaaaagagtatgaaaacctttcactctcc |
495 |
Q |
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| T |
13976364 |
ctaagtgcctccccctattaattaaaaacaacatgattcacttcatatcaataaaagagtatgaaaacctttcactctcc |
13976285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 12970303 - 12970247
Alignment:
| Q |
75 |
tataagtgggagacatcggtcaccttaaaagtcggatttgtagggtttagttaggcc |
131 |
Q |
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|||||||||||| |||| |||||||||||| ||| ||||||| |||||| |||||| |
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| T |
12970303 |
tataagtgggaggcatctctcaccttaaaagccggttttgtagtgtttaggtaggcc |
12970247 |
T |
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