View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19788_high_1 (Length: 499)
Name: NF19788_high_1
Description: NF19788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19788_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 46 - 443
Target Start/End: Original strand, 42919177 - 42919574
Alignment:
| Q |
46 |
tacttgttaggcacaaattgattcaacttgttaggcacatattgatttggtgagtaacgaaatttcaaaaaccatgaaaatccctagtctaataggagaa |
145 |
Q |
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| T |
42919177 |
tacttgttaggcacaaattgattcaacttgttaggcacagattgattcagtgagtaacgaaatttcaaaaaccatgaaaatccctagtctaataggagaa |
42919276 |
T |
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| Q |
146 |
aataaattgcagcaatcatcaattcacaaagctgtctgggtgaagtatgacggcaatgannnnnnnagttggaaaatctttgttgagttgatgttgatga |
245 |
Q |
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| T |
42919277 |
aataaattgcagcaatcatcaattcacaaagctgtctgggtgaagtatgacggcaatgatttttttagttggaaaatccttgttgagttgatgttgatga |
42919376 |
T |
|
| Q |
246 |
acatgtacatgtgggcactgttcctgctatcattaccaagtgtttcgattaacacttagttattgtaaaactttgtttgggtatcaggttccatatggat |
345 |
Q |
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| T |
42919377 |
acatgtacatgtgggcactgttcctgctaccgttaccaagtgtttcgattaacacttagttattgtaaaactttgtttgggtatcaggttccgtatggat |
42919476 |
T |
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| Q |
346 |
ggatatattcatcgtattatagttgcggattgaacattatttggtgtgctagattgcaagtttggaggggagagaagggaggaacattattttgagag |
443 |
Q |
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| T |
42919477 |
ggatatattcatcgtattatagttgcggattgaatattatttggtgtactagattgcaagtttggaggggagagaagggtggaacattattttgagag |
42919574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 42915856 - 42915886
Alignment:
| Q |
19 |
accttggttttatggttgataatcatatact |
49 |
Q |
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| T |
42915856 |
accttggttttatggttgataatcatatact |
42915886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 40766222 - 40766325
Alignment:
| Q |
101 |
aacgaaatttcaaaaaccatgaaaatccctagtctaataggagaaaataaattgcagcaatcatcaattcacaaagctgtctgggtgaagtatgacggca |
200 |
Q |
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||||||||||||||||| ||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40766222 |
aacgaaatttcaaaaactatgtaaatccttagtctagtgggagaaaataaattgcagcaatcatcaattcacaaagctgtctgggtgaagtttgacggca |
40766321 |
T |
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| Q |
201 |
atga |
204 |
Q |
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|||| |
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| T |
40766322 |
atga |
40766325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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