View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19788_high_2 (Length: 349)
Name: NF19788_high_2
Description: NF19788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19788_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 2021749 - 2022077
Alignment:
| Q |
17 |
attcattacgaatattgtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatacagcctactgttgctgcct |
116 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021749 |
attcattacgagtattgtgctgcctccactttcattgattgttactcatgaaattatgttgtattgtagtatatatcaatacagcctactgttgctgcct |
2021848 |
T |
|
| Q |
117 |
ataacctatagaatagcagtcctaacaaccagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatc |
216 |
Q |
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||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021849 |
ataacctatagaatagcagtcctaagaaacagttgttctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatc |
2021948 |
T |
|
| Q |
217 |
atcacctaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaa |
316 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2021949 |
atcacgtaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacatcgattatttaa |
2022048 |
T |
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| Q |
317 |
ctcgatactggtgttccttcttttcagtc |
345 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2022049 |
ctcgatactggtgttccttcttttcagtc |
2022077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 1990187 - 1990503
Alignment:
| Q |
17 |
attcattacgaatattgtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatacagcctactgttgctgcct |
116 |
Q |
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||||||||||| |||||||| | |||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| | |||| | |
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| T |
1990187 |
attcattacgagtattgtgcagtctccactttcattcatggttattcgtgaaactatgttgtattgtagtatatatcaatacagcctactttagctgtgt |
1990286 |
T |
|
| Q |
117 |
ataacctatagaatagcagtcctaacaaccagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatc |
216 |
Q |
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|||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |
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| T |
1990287 |
ataacctataaaataacagtcctaacaaacagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattatc |
1990374 |
T |
|
| Q |
217 |
atcacctaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaa |
316 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
1990375 |
atcacgtaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactatattgaacatcgattatttaa |
1990474 |
T |
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| Q |
317 |
ctcgatactggtgttccttcttttcagtc |
345 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
1990475 |
cttgatactggtgttccttcttttcagtc |
1990503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 146 - 345
Target Start/End: Original strand, 2036020 - 2036198
Alignment:
| Q |
146 |
cagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatca |
245 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||| |
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| T |
2036020 |
cagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattaccatcacgtaatcataaccaacttttgatca |
2036107 |
T |
|
| Q |
246 |
ataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttcttttcagtc |
345 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2036108 |
ataaagaatattcatattctcttt---------agcttaggtttctactatattgaacatcgattatttaactcgatactggtgttccttcttttcagtc |
2036198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 2035937 - 2036022
Alignment:
| Q |
17 |
attcattacgaatattgtgctgcctccactttcattcat--tgttactcatgaaactatgttgtattgtagtatatatcaatacag |
100 |
Q |
| |
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||||||||||| |||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2035937 |
attcattacgagtattgtgcagtctccactttcattcatggtgttactcatgaagctatgttgtattgtagtatatatcaatacag |
2036022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 2019266 - 2019313
Alignment:
| Q |
161 |
taactaactgaatcaaataagttagagggatttgacctttatagatac |
208 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
2019266 |
taactaactgaatcaaatcagttagagggatttgacctctataaatac |
2019313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 2019117 - 2019189
Alignment:
| Q |
17 |
attcattacgaatattgtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtata |
89 |
Q |
| |
|
||||||||| | |||||||| ||||||||| | |||||| ||||| |||| |||||||||||||| |||||| |
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| T |
2019117 |
attcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttgtattgcagtata |
2019189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 2019392 - 2019467
Alignment:
| Q |
267 |
tttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttcttttcag |
343 |
Q |
| |
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||||||||||||| ||| |||||| | | ||| || || |||||||||| | |||||||||||||||||||||||| |
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| T |
2019392 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaatt-gatactggtgttccttcttttcag |
2019467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 48204741 - 48204669
Alignment:
| Q |
273 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttcttttcagtc |
345 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48204741 |
aaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttcttttcagtc |
48204669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 2428286 - 2428348
Alignment:
| Q |
273 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttcctt |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
2428286 |
aaagatagcttaggtttctactgtattgaacatcaattatttaactcgatactggtgttcctt |
2428348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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