View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19788_low_3 (Length: 367)
Name: NF19788_low_3
Description: NF19788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19788_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 34430175 - 34429824
Alignment:
| Q |
1 |
cagttgtcgaaattctcacctttattgtgccttgacgaagctggttaagcgtttcagaggattcttcaaatgtctaatacaataaacaaaaaatgagaaa |
100 |
Q |
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| T |
34430175 |
cagttgtcgaaattctcacctttattgtgccttgacgaagctggttaagcgtttcagaggattcttcaaatgtctaatacaataaacaaaaaatgagaaa |
34430076 |
T |
|
| Q |
101 |
gatttgtaactaaatgatctatcattagaaataattcacataaaagaccgtaaaatccacctgagcactgcttagaagagcgcccgaaatgagcggaggc |
200 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430075 |
gaattgtaactaaatgatctatcattagacataattcacataaaagaccgtaaaatccacctgagcactgcttagaagagcgcccgaaatgagcggaggc |
34429976 |
T |
|
| Q |
201 |
aattgtcgaagctgatcaatcatcaaagctaccaaaggactaacaacaagtgtaatcccaggcaaaatcaacgcactcaattgataacacaacgatttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34429975 |
aattgtcgaagctgatcaatcatcaaagctaccaaaggactaacaacaagcgtaatcccaggcaaaatcaacgcactcaattgataacacaacgatttcc |
34429876 |
T |
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| Q |
301 |
cagcaccagtcggcaaaataagcatcgtcgatttcccagcaagcacattctt |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34429875 |
cagcaccagtcggcaaaataagcatcgtcgatttcccagcaagcacattctt |
34429824 |
T |
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