View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19788_low_6 (Length: 326)
Name: NF19788_low_6
Description: NF19788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19788_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 268
Target Start/End: Original strand, 42677248 - 42677514
Alignment:
| Q |
2 |
ccatcaagagattgagaatttccaccagaaaatcaagacatttttggttcgtagaatttgaatcctgaggtagcaaaattgttgccgatactatgcacaa |
101 |
Q |
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| T |
42677248 |
ccatcaagagattgagaatttccaccagaaaatcaagacatttttggttcatagaatttgaatcctgaggtagcaaaattgttgccgatactatgcacaa |
42677347 |
T |
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| Q |
102 |
ttatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctatt |
201 |
Q |
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| T |
42677348 |
ttatttgctttttgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctatt |
42677447 |
T |
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| Q |
202 |
atgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
268 |
Q |
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| T |
42677448 |
gtgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
42677514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 52835029 - 52835123
Alignment:
| Q |
29 |
gaaaatcaagacatttttggttcgtagaatttgaatc--ctgaggtagcaaaa-ttgttgccgatactatgcacaattatttgctttgtgaacac |
120 |
Q |
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| T |
52835029 |
gaaaatcaagacattttggcttcatagaatttgaatctcctgaggtagcaaaaattgttgctgatactatgcacaattatttgctctttgaacac |
52835123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 42677520 - 42677553
Alignment:
| Q |
285 |
atgtgacggtgagttttgtttgtggtgatgatgt |
318 |
Q |
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| T |
42677520 |
atgtgacggtgagttttgtttgtggtgatgatgt |
42677553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 48968887 - 48968805
Alignment:
| Q |
76 |
aaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca |
162 |
Q |
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| T |
48968887 |
aaaattgttgctgatactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca |
48968805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 15496130 - 15496097
Alignment:
| Q |
285 |
atgtgacggtgagttttgtttgtggtgatgatgt |
318 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
15496130 |
atgtggcggtgagttttgtttgtggtgatgatgt |
15496097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 48969030 - 48968994
Alignment:
| Q |
29 |
gaaaatcaagacatttttggttcgtagaatttgaatc |
65 |
Q |
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| T |
48969030 |
gaaaatcaagacattttgggttcatagaatttgaatc |
48968994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 6705752 - 6705719
Alignment:
| Q |
285 |
atgtgacggtgagttttgtttgtggtgatgatgt |
318 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
6705752 |
atgtggcggtgagttttgtttgtggtgatgatgt |
6705719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 40900436 - 40900403
Alignment:
| Q |
285 |
atgtgacggtgagttttgtttgtggtgatgatgt |
318 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
40900436 |
atgtggcggtgagttttgtttgtggtgatgatgt |
40900403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
| Q |
209 |
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca |
257 |
Q |
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| T |
40900512 |
acgctagccatcaattgggaaatattgcaaagggaggttcattcataca |
40900464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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