View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19788_low_7 (Length: 247)
Name: NF19788_low_7
Description: NF19788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19788_low_7 |
 | |
|
| [»] chr3 (30 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 6915017 - 6914787
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915017 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaaaaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
6914918 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6914917 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
6914818 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcataga |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6914817 |
ccaaatggagcaaggagagcgttggcataga |
6914787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6235963 - 6235735
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6235963 |
ccatcaactattaactctcttgagttgacaaattgttccaacctaagaaaaatcaactacaagggtcttctccacctcacttcacttgaatctctatata |
6235864 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
||||||| || |||||| |||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
6235863 |
ttgaagactgtccttgttttgagagcttgccagaggagggtctacccatctccctttctactttgtccattcatgactgtccattaattaagcagttgta |
6235764 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
6235763 |
ccaaaaggagcaaggagagcgttggcata |
6235735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 13275517 - 13275745
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13275517 |
ccatcaactattaactctcttgagttgacaaattgttcaaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatata |
13275616 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | ||||| |
|
|
| T |
13275617 |
ttgaagattgcccttgtcttgagagcttgccagaggagggtctacccagttccctttctactttgtccattcatgattgtccattaattaagcagttgta |
13275716 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| ||||||||| |||||||||||| |
|
|
| T |
13275717 |
ccaaaaggagcaaggcaagcgttggcata |
13275745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6140202 - 6139974
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6140202 |
ccatcaactattaactctcttgagttgacaaattgttcaaacctaaaaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatata |
6140103 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| | ||| | ||||| |
|
|
| T |
6140102 |
ttgaagattgcccttgtcttgagagcttgccagaggagggtctacccagttccctttctactttgtccattcatgattgtccattaatcaagcagttgta |
6140003 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |
|
|
| T |
6140002 |
ccaaaaggagcaaggcgagcgttggcata |
6139974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6257118 - 6256890
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6257118 |
ccatcaactattaactctcttgagttgacaaattgttcaaacctaacaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatata |
6257019 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| ||||| | |||| |
|
|
| T |
6257018 |
ttgaagattgtccttgtcttgatagcttgccagaggagggtctacccagctccctttctactttgtcgattcatgattgtccattaattaagcagctgta |
6256919 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| ||||||||| |||| |||||||| |
|
|
| T |
6256918 |
ccaaaaggagcaaggcgagcattggcata |
6256890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 6593466 - 6593694
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
6593466 |
ccatcaactattaaatcctttgagttaacaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgta |
6593565 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||| |
|
|
| T |
6593566 |
ttgaagactgcccttgtcttgacagcttgccagaggagggtctacccagctccctttctactttgtccattcatgactgcccattaattaagcagctgta |
6593665 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
|||||||||| |||| |||| |||||||| |
|
|
| T |
6593666 |
ccaaatggaggaaggcgagcattggcata |
6593694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6263598 - 6263370
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
||||||| |||||| ||| | ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
6263598 |
ccatcaagtattaactcttttgagttgacaaattgtcccaacctaagaaaaataaactgcaagggtcttctccacctcacttcactcaaatctctatata |
6263499 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| ||||| | ||||| |
|
|
| T |
6263498 |
ttgaagattgcccttgtcttgagagcttgccagaggagggtctacccagctccctttctactttgtcaattcatgattgtccattaattaagcagttgta |
6263399 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |
|
|
| T |
6263398 |
ccaaacggagcaaggcgagcgttggcata |
6263370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6243233 - 6243005
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
||||||| |||||| ||||| || |||| |||||||||| ||||| || |||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6243233 |
ccatcaagtattaactctcttgatttgaaaaattgttcctgcctaaaaaaaataaactgcaagggtcttctccacctcacttcacttgaatctctatata |
6243134 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||| | ||| |||||||||||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
6243133 |
ttgaagattgcccttgtcttgagagcttgccagaggagggtctacctatctctctttctactttgtcaattcatgactgtccattacttaagcagttgta |
6243034 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
6243033 |
ccaaaaggagcaaggagagcgttggcata |
6243005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6898004 - 6897776
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6898004 |
ccatcaactatgaaatctcttgagttaacaaattgttccaacctaagaataataaactataagggtcttctccacctcacttcacttgaatctctatata |
6897905 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||| | ||| |
|
|
| T |
6897904 |
ttgaagactgccctttccttgagagcttgccggaggagtgtctacccagctccctttctactttgtccattcatgattgcccattaattaagcagaagta |
6897805 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| |||| |||||||| ||||||||| |
|
|
| T |
6897804 |
ccaaaaggaggaaggagagtgttggcata |
6897776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6166813 - 6166585
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
6166813 |
ccatcaagtattacctctcttgagttgacaaattgttccaacctaagaaaaataaactacaacggtcttttccacctcacttcacttgaatctctatata |
6166714 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| || |||| ||||||||| ||||| ||||||||||| |||| ||| ||||||||||||||||| ||||| |
|
|
| T |
6166713 |
ttgatgattgcccttgtcttgagagcttgccagatgagggtctacccagatccctgtctactttgtcaattcgtgattgtccattacttaagaagttgta |
6166614 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| |||||||||||| ||| |||||| |
|
|
| T |
6166613 |
ccaaaaggagcaaggagaacgtaggcata |
6166585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 6724192 - 6724420
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
6724192 |
ccatcaactattaaatcctttgagttaacaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgta |
6724291 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||| |
|
|
| T |
6724292 |
ttgaagactgcccttgtcttgacagcttgccagaggagggtctacccagctccctttctactttgtccattcatgactgcccattaattaagcagaagta |
6724391 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| |||| ||| |||| |||||||| |
|
|
| T |
6724392 |
ccaaaaggaggaagctgagctttggcata |
6724420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 6880432 - 6880204
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatata |
116 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||| || |
|
|
| T |
6880432 |
ccatcaactatgaaatctcttgagttaacaaattgttccaacctaagaataataaactacaagggtcttctccacatgacctcacttgaatctctatgta |
6880333 |
T |
|
| Q |
117 |
ttgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgta |
216 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||| || |||||| ||||| | ||| |
|
|
| T |
6880332 |
ttgaagactgcccttgtcttgacagcttgccagaggagggtctacccagttccctttctactttgtccattcatgattgcccattaattaagcagaagta |
6880233 |
T |
|
| Q |
217 |
ccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| |||| |||||||||||||||||| |
|
|
| T |
6880232 |
ccaaaaggaggaaggagagcgttggcata |
6880204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 245
Target Start/End: Original strand, 6851241 - 6851399
Alignment:
| Q |
87 |
tccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccat |
186 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||| |||||| |
|
|
| T |
6851241 |
tccagctcacttctcttgaatctctatatattgaagattgcccttgtcttgagagcttgccggaggagggtcttcccagatccctttctacttagtccat |
6851340 |
T |
|
| Q |
187 |
tcatgactgtccattacttaagaaattgtaccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||| |||| ||| ||||| |||||||| |
|
|
| T |
6851341 |
tcatgactgtccattaattaagcagaagtaccaaagggaggaagcagagcattggcata |
6851399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 245
Target Start/End: Original strand, 4391069 - 4391254
Alignment:
| Q |
60 |
taagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgccggaggaggatct |
159 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | || || |||| ||| |||| || ||||||| |||| ||||||||||||||| ||| ||| |
|
|
| T |
4391069 |
taagaataataaactgcaagggtcttctccaccttaaatctctcacatctttatctattcaacattgccccagtctcgaacgcttgccggagaagggtct |
4391168 |
T |
|
| Q |
160 |
acccagctccctttctactttgtccattcatgactgtccattacttaagaaattgtaccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||| | |||||||||| |||| ||||||| | ||||||||||||||| | |||||||| |||| |||||||| | ||||||| |
|
|
| T |
4391169 |
accaaactccctttctcagttgttcattcataaatgtccattacttaaggagcagtaccaaaaggaggaaggagagtgctggcata |
4391254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 5296644 - 5296433
Alignment:
| Q |
34 |
tctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgt |
133 |
Q |
| |
|
||||||||||| | ||||||| || ||||||||||| || |||||||| ||||| || |||| || || |||| || ||||||| | ||||| | || |
|
|
| T |
5296644 |
tctcgagttgagatattgttcaaagctaagaataatgaattacaagggccttcttcatctcaaatctctccaatccttacatattgatggttgccttggt |
5296545 |
T |
|
| Q |
134 |
cttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgtaccaaatggagcaaggag |
233 |
Q |
| |
|
||||| ||||||| |||||| |||||||| ||||||||||| |||||||||| || ||||||| |||||||| || |||||||| |||| ||||| |
|
|
| T |
5296544 |
cttgagtgcttgcctgaggagtgtctacccaactccctttctattttgtccattaataactgtccgatacttaagcaacggtaccaaaaggaggaaggaa |
5296445 |
T |
|
| Q |
234 |
agcgttggcata |
245 |
Q |
| |
|
| | |||||||| |
|
|
| T |
5296444 |
aacattggcata |
5296433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 8587812 - 8587677
Alignment:
| Q |
47 |
aattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgc |
146 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| |||||||||||||||| || ||| ||| |||| | ||| | | |||||| ||||||| |||||| |
|
|
| T |
8587812 |
aattgttcaaagctaagaataataaactgcaaaggtcttctccacctcaaatctcttaaatatctaaaaatttacaactgccctagtcttgagagcttgc |
8587713 |
T |
|
| Q |
147 |
cggaggaggatctacccagctccctttctactttgt |
182 |
Q |
| |
|
| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
8587712 |
cagaggagggtctacccaactccctttctactttgt |
8587677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 7747918 - 7747850
Alignment:
| Q |
17 |
ccatcaactattaaatctctcgagttgacaaattgttccaacctaagaataataaactacaagggtctt |
85 |
Q |
| |
|
||||||||||||| |||||| ||||| | |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7747918 |
ccatcaactattacatctcttgagttaaaaaattgttccaacctaagaagaataaactacaagggtctt |
7747850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 8571092 - 8571232
Alignment:
| Q |
47 |
aattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgc |
146 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||| ||||||||||||| || || |||||||| ||||| ||| ||||||||||| |||||| |
|
|
| T |
8571092 |
aattgttcaaagctaagaataatgaactacaagggacttctccacctcaaatctctccaatctctaaatattttgtcttgtccttgtcttgagagcttgc |
8571191 |
T |
|
| Q |
147 |
cggaggaggatctacccagctccctttctactttgtccatt |
187 |
Q |
| |
|
| ||||||| |||||| | |||||||||||||||| ||||| |
|
|
| T |
8571192 |
cagaggagggtctaccaatctccctttctactttggccatt |
8571232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 6523627 - 6523764
Alignment:
| Q |
48 |
attgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgcc |
147 |
Q |
| |
|
||||||| || ||||||||||| ||| |||||||| |||||||||||| || || ||| ||||||||||||||| || ||| ||||||| ||||||| |
|
|
| T |
6523627 |
attgttcaaagctaagaataatgaacaacaagggttttctccacctcaaatctctcaaatatctatatattgaagactgtcctagtcttgagagcttgcc |
6523726 |
T |
|
| Q |
148 |
---ggaggaggatctacccagctccctttctactttgt |
182 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
6523727 |
agagaaggaggatctacccaactcccttactactttgt |
6523764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 6530660 - 6530805
Alignment:
| Q |
40 |
gttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaa |
139 |
Q |
| |
|
||||| ||||| ||| || ||||||||||| ||| | |||||| |||||||||||| || ||||| | ||||||||||||||| |||||| |||||| |
|
|
| T |
6530660 |
gttgaaaaatttttcaaagctaagaataatgaacaaaaagggttttctccacctcaaatctcttgattgtctatatattgaagactgccctactcttgag |
6530759 |
T |
|
| Q |
140 |
cgcttgcc---ggaggaggatctacccagctccctttctactttgt |
182 |
Q |
| |
|
||||| | | ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
6530760 |
agcttgacagagaaggaggatctacccaactcccttactactttgt |
6530805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 5248050 - 5247933
Alignment:
| Q |
60 |
taagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgccggaggaggatct |
159 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || || ||||| ||| |||| | ||||||| |||||||||||||||| ||||||| ||| |
|
|
| T |
5248050 |
taagaataataaacttcaagggtcttctccaccttgaatctctcaaatctttatctattcgacattgccccagtcttgaacgcttgccagaggagggtct |
5247951 |
T |
|
| Q |
160 |
acccagctccctttctac |
177 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
5247950 |
tcccaactccctttctac |
5247933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 5278482 - 5278357
Alignment:
| Q |
116 |
attgaagattgcccttgtcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgt |
215 |
Q |
| |
|
|||||| |||| ||||||||||| || ||||| ||||||| ||| || ||||||||||||||||||| ||||| ||| |||| | || ||||| | || |
|
|
| T |
5278482 |
attgaatattgtccttgtcttgagcgattgccagaggagggtcttccgagctccctttctactttgtacattcgtgaatgtcgaatagttaagcagaggt |
5278383 |
T |
|
| Q |
216 |
accaaatggagcaaggagagcgttgg |
241 |
Q |
| |
|
|||||| |||| |||||||| ||||| |
|
|
| T |
5278382 |
accaaaaggaggaaggagagagttgg |
5278357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 8469449 - 8469305
Alignment:
| Q |
47 |
aattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgc |
146 |
Q |
| |
|
|||||||| || ||||||||||| ||| |||||||| |||||||||||| || || || ||||||||||| || |||||| ||||||| |||||| |
|
|
| T |
8469449 |
aattgttcaaagctaagaataatgaacaacaagggttttctccacctcaaatccctcaaagatctatatattgtcgactgccctagtcttgagtgcttgc |
8469350 |
T |
|
| Q |
147 |
c---ggaggaggatctacccagctccctttctactttgtccattc |
188 |
Q |
| |
|
| | |||||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
8469349 |
cagagaaggagggtctacccaactccctttctaatttgtacattc |
8469305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 245
Target Start/End: Complemental strand, 5265955 - 5265770
Alignment:
| Q |
60 |
taagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgccggaggaggatct |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || || || | |||||||| | | ||||| || ||||||||||||| ||||| | ||| |
|
|
| T |
5265955 |
taagaataataaactacaagggtcttctccaccttaaatctctcagatatttatatattctacactgccccagtgttgaacgcttgccagaggacggtct |
5265856 |
T |
|
| Q |
160 |
acccagctccctttctactttgtccattcatgactgtccattacttaagaaattgtaccaaatggagcaaggagagcgttggcata |
245 |
Q |
| |
|
||||| ||| |||| | |||| | || | ||||||||||| ||||| | |||||||| |||| |||||||||||||||||| |
|
|
| T |
5265855 |
acccaactcactttatcagttgttgagtcttaactgtccattaattaaggagcagtaccaaaaggaggaaggagagcgttggcata |
5265770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 6450938 - 6450986
Alignment:
| Q |
47 |
aattgttccaacctaagaataataaactacaagggtcttctccacctca |
95 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
6450938 |
aattgttcaaacctaagaataatgaactacaagggttttctccacctca |
6450986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 6730866 - 6730914
Alignment:
| Q |
47 |
aattgttccaacctaagaataataaactacaagggtcttctccacctca |
95 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
6730866 |
aattgttcaaacctaagaataatgaactacaagggttttctccacctca |
6730914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 5261825 - 5261632
Alignment:
| Q |
46 |
aaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttg |
145 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| | |||| || | | | |||| || |||||| ||| ||||||||||| || ||| |
|
|
| T |
5261825 |
aaattgttcaaagctaagaataataaactacaagggtcttcttaatctcaaatctc-tcagactct-tacattgaatattatccttgtcttgagcgattg |
5261728 |
T |
|
| Q |
146 |
ccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgtaccaaatggagcaaggagagcgttgg |
241 |
Q |
| |
|
|| ||||||| ||| || |||||||||||||| |||| |||| ||| |||||| || ||||| | |||||||| || | |||||||| ||||| |
|
|
| T |
5261727 |
ccagaggagggtcttccgagctccctttctacattgtatattcgtgaatgtccaatagttaagcagaggtaccaaaaggtggaaggagagagttgg |
5261632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 6945157 - 6945020
Alignment:
| Q |
47 |
aattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttgtcttgaacgcttgc |
146 |
Q |
| |
|
|||||||| || ||||||||||| ||| | |||||| |||||||||||| || || ||| |||||||||| | |||||| ||||||| |||||| |
|
|
| T |
6945157 |
aattgttcaaagctaagaataatgaacaaaaagggttttctccacctcaaatctctcaaatatctatatattatcaactgccctagtcttgagagcttgc |
6945058 |
T |
|
| Q |
147 |
c---ggaggaggatctacccagctccctttctactttg |
181 |
Q |
| |
|
| | ||||||||||||||| |||||||| ||||||| |
|
|
| T |
6945057 |
cagagaaggaggatctacccaactccctttatactttg |
6945020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 6782471 - 6782520
Alignment:
| Q |
46 |
aaattgttccaacctaagaataataaactacaagggtcttctccacctca |
95 |
Q |
| |
|
||||||||| || ||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
6782471 |
aaattgttcaaagctaagaataatgaacaacaagggttttctccacctca |
6782520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 6482129 - 6482173
Alignment:
| Q |
50 |
tgttccaacctaagaataataaactacaagggtcttctccacctc |
94 |
Q |
| |
|
||||| || ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
6482129 |
tgttcaaagctaagaataatgaactacaagggttttctccacctc |
6482173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 13621 - 13833
Alignment:
| Q |
33 |
ctctcgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattgaagattgcccttg |
132 |
Q |
| |
|
|||| ||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13621 |
ctcttgagttgaaaaattgttccaatctaggaataataaactacaagggtcttctctacctcactttgcttgaatctctatatattgaagattgcccttg |
13720 |
T |
|
| Q |
133 |
tcttgaacgcttgccggaggaggatctacccagctccctttctactttgtccattcatgactgtccattacttaagaaattgtaccaaatggagcaagga |
232 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||| ||||| | |||||||| |||| ||||| |
|
|
| T |
13721 |
tcttgagagcttgccggaggagggtcttcccagatccctttctacttagtccattcatgactgtccattaattaagcagaagtaccaaagggaggaagga |
13820 |
T |
|
| Q |
233 |
gagcgttggcata |
245 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
13821 |
gagcattggcata |
13833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 6575469 - 6575595
Alignment:
| Q |
50 |
tgttccaacctaagaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatatt-gaagattgcccttgtcttgaacgcttgccg |
148 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||||| || ||| || |||||||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
6575469 |
tgttcaaagctaagaataatgaactacaagggtcttctccacctcaaatctcttaaagttctatatattggaaga-tgccctagtcttgagcgcttgcca |
6575567 |
T |
|
| Q |
149 |
gaggaggatctacccagctccctttcta |
176 |
Q |
| |
|
||||| | | |||| | ||||||||||| |
|
|
| T |
6575568 |
gaggaaggtataccgaactccctttcta |
6575595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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