View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19789_high_7 (Length: 330)
Name: NF19789_high_7
Description: NF19789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19789_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29063014 - 29063175
Alignment:
| Q |
1 |
ttatacagctgtattattccgagatgatttgttatttcttgagctcgcatgcatagcattcatgcacatatagtttccgtgattgcacccacgaactgtg |
100 |
Q |
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| T |
29063014 |
ttatacagctgtgttattccgagatgattttttatttcatgagctcgcatgcataatattcatgcacatatagtttccgtgattgcacacacgaactccg |
29063113 |
T |
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| Q |
101 |
acttgattagcgacaaactgcaagtacgtgtgcggccaagtcctccacctgcaatgaacctg |
162 |
Q |
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| T |
29063114 |
acttgattagggacaaactgcaagtacgtgtgcggccaagtcctccacctgcaatgcacctg |
29063175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29100950 - 29101111
Alignment:
| Q |
1 |
ttatacagctgtattattccgagatgatttgttatttcttgagctcgcatgcatagcattcatgcacatatagtttccgtgattgcacccacgaactgtg |
100 |
Q |
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| T |
29100950 |
ttatacagctgtgttattccgagatgattttttatttcatgagctcgcatgcataatattcatgcacatatagtttccgtgattgcacacacgaactccg |
29101049 |
T |
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| Q |
101 |
acttgattagcgacaaactgcaagtacgtgtgcggccaagtcctccacctgcaatgaacctg |
162 |
Q |
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| T |
29101050 |
acttgattagggacaaactgcaagtacgtgtgcggccaagtcctccacctgcaatgcacctg |
29101111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29117868 - 29118029
Alignment:
| Q |
1 |
ttatacagctgtattattccgagatgatttgttatttcttgagctcgcatgcatagcattcatgcacatatagtttccgtgattgcacccacgaactgtg |
100 |
Q |
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| T |
29117868 |
ttatacagctgtgttattccgagatgattttttatttcatgagctcgcatgcataatattcatgcacatatagtttccgtgattgcacacacgaactccg |
29117967 |
T |
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| Q |
101 |
acttgattagcgacaaactgcaagtacgtgtgcggccaagtcctccacctgcaatgaacctg |
162 |
Q |
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| T |
29117968 |
acttgattagggacaaactgcaagtacgtgtgcggccaagtcctccacctgcaatgcacctg |
29118029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 29120620 - 29120750
Alignment:
| Q |
32 |
ttatttcttgagctcgcatgcatagcattcatgcacatatagtttccgtgattgcacccacgaactgtgacttgattagcgacaaactgcaagtacgtgt |
131 |
Q |
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| T |
29120620 |
ttatttcatgagctcgcatgcataatattcatgcacatatagtttccgtgattgcacacacgaactccgacttgattagggacaaactgcaagtacgtgt |
29120719 |
T |
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| Q |
132 |
gcggccaagtcctccacctgcaatgaacctg |
162 |
Q |
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| T |
29120720 |
gcggccaagtcctccacctgcaatgcacctg |
29120750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 29063457 - 29063514
Alignment:
| Q |
218 |
aaagaggaaagtatttgttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
275 |
Q |
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| T |
29063457 |
aaagaggaaagtatttcttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
29063514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 29101397 - 29101450
Alignment:
| Q |
222 |
aggaaagtatttgttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
275 |
Q |
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| T |
29101397 |
aggaaagtatttgttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
29101450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 29118311 - 29118368
Alignment:
| Q |
218 |
aaagaggaaagtatttgttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
275 |
Q |
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| T |
29118311 |
aaagaggaaagtatttcttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
29118368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 29121036 - 29121089
Alignment:
| Q |
222 |
aggaaagtatttgttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
275 |
Q |
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| T |
29121036 |
aggaaagtatttgttactgtattgtaatttgaacaagcaatcagtcccaaagtt |
29121089 |
T |
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