View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19789_low_1 (Length: 677)

Name: NF19789_low_1
Description: NF19789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19789_low_1
NF19789_low_1
[»] chr8 (15 HSPs)
chr8 (83-408)||(43617210-43617529)
chr8 (411-544)||(43617028-43617161)
chr8 (576-662)||(43616908-43616996)
chr8 (18-86)||(30470864-30470932)
chr8 (18-83)||(36912377-36912442)
chr8 (18-85)||(18029545-18029612)
chr8 (19-83)||(26632200-26632264)
chr8 (18-58)||(41477168-41477208)
chr8 (18-59)||(8610027-8610068)
chr8 (18-83)||(34955712-34955776)
chr8 (18-60)||(38584940-38584982)
chr8 (18-58)||(4625540-4625580)
chr8 (18-90)||(35931815-35931887)
chr8 (18-58)||(40283460-40283500)
chr8 (18-58)||(43524437-43524477)
[»] chr2 (7 HSPs)
chr2 (83-408)||(275176-275486)
chr2 (18-85)||(37245461-37245528)
chr2 (454-544)||(275567-275654)
chr2 (18-58)||(17929302-17929342)
chr2 (18-73)||(14152114-14152169)
chr2 (18-60)||(13151531-13151573)
chr2 (18-58)||(17485804-17485844)
[»] chr5 (7 HSPs)
chr5 (21-83)||(41263322-41263384)
chr5 (18-85)||(8176349-8176416)
chr5 (18-85)||(41153052-41153119)
chr5 (18-83)||(37882475-37882540)
chr5 (18-61)||(14278811-14278854)
chr5 (27-85)||(42608099-42608157)
chr5 (18-58)||(39008465-39008505)
[»] chr7 (6 HSPs)
chr7 (21-85)||(37888511-37888575)
chr7 (18-83)||(22737641-22737706)
chr7 (18-48)||(37887843-37887873)
chr7 (18-83)||(22191182-22191246)
chr7 (14-55)||(25218850-25218891)
chr7 (18-58)||(26812099-26812139)
[»] scaffold0100 (1 HSPs)
scaffold0100 (18-82)||(30584-30648)
[»] chr4 (4 HSPs)
chr4 (23-85)||(47750275-47750337)
chr4 (18-83)||(35394877-35394942)
chr4 (18-61)||(34199315-34199358)
chr4 (18-58)||(13094436-13094476)
[»] chr3 (11 HSPs)
chr3 (15-85)||(25832767-25832836)
chr3 (18-83)||(41890497-41890561)
chr3 (18-83)||(46572971-46573036)
chr3 (18-50)||(35424055-35424087)
chr3 (15-59)||(36178747-36178791)
chr3 (18-58)||(42601748-42601788)
chr3 (18-59)||(4045966-4046007)
chr3 (18-59)||(10426477-10426518)
chr3 (18-59)||(35472672-35472713)
chr3 (18-58)||(26165600-26165640)
chr3 (18-58)||(31170271-31170311)
[»] chr1 (6 HSPs)
chr1 (18-83)||(44651032-44651096)
chr1 (18-58)||(41542313-41542353)
chr1 (18-61)||(3755074-3755117)
chr1 (18-60)||(44334270-44334312)
chr1 (18-55)||(8464085-8464122)
chr1 (18-58)||(29523686-29523726)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-58)||(124001-124041)
[»] chr6 (3 HSPs)
chr6 (18-52)||(197795-197829)
chr6 (15-61)||(8669872-8669918)
chr6 (18-52)||(29428564-29428598)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 83 - 408
Target Start/End: Complemental strand, 43617529 - 43617210
Alignment:
Q  83 taaccaacctggagctgcagatgcagcaggacctacaccacctggt-agcgagtctggcccctcagaagaagtcagaatcatcatcaggcaagggagtag 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||| ||    
T  43617529 taaccaacctggagctgcagatgcagcaggacctacaccacctggttagcgagtctggcccctcagaag---tcagaatcatcatcaggcaagggagcag 43617433  T
Q  182 atggggatgtgattgatgctgattttactgaatctaaatgagttatagagattatttaataggattgtttttattttatgctacttccgtactaaattgg 281  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43617432 atggggatgtgattgatgctgattttactgactctaaatgagttatagagattatttaataggattgtttttattttatgctacttccgtactaaattgg 43617333  T
Q  282 tagtgat-ttttgtcaatggagagcgagggttttattataaatagacnnnnnnnataggtggtgtggtcattgactcacgtttctgtatctttggaaatt 380  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||       ||||     |||||||||||| ||||||||||||||||||||||||    
T  43617332 tagtgattttttgtcaatggagagcgagggttttattataaatagactttttttatag-----gtggtcattgacgcacgtttctgtatctttggaaatt 43617238  T
Q  381 ttgtatgtgaaatacaagtattattgtg 408  Q
    ||||||||||||||||||||||||||||    
T  43617237 ttgtatgtgaaatacaagtattattgtg 43617210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 411 - 544
Target Start/End: Complemental strand, 43617161 - 43617028
Alignment:
Q  411 tttagagacacctattaagatacgaatctgcgtgattttacaaatgattgtttgcatgttaaacaatgtaatgatgcaactttgtataaacgatagtgtc 510  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43617161 tttacagacacctattaagatacgaacctgcgtgattttacaaatgattgtttgcatgttaaacaatgtaatgatgcaactttgtataaacgatagtgtc 43617062  T
Q  511 acaatcggctagattgtacgacggtgtatgtgac 544  Q
    |||||||||||||||||||||||||||| |||||    
T  43617061 acaatcggctagattgtacgacggtgtaggtgac 43617028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 576 - 662
Target Start/End: Complemental strand, 43616996 - 43616908
Alignment:
Q  576 gctctaagtaccaatctgctatacaaattaccattaccgagccggaaagcagtcttctttttaacta--ctactaattcccaactcttt 662  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  43616996 gctctaagtaccaatctgctatacaaattaccattagtgagccggaaagcagtcttctttttaactactctactaattcccaactcttt 43616908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30470864 - 30470932
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaac 86  Q
    ||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||    
T  30470864 agtgttgggaattgaaaaaatggatcttgaatggtgttgaatggtgtaaaccattggggatggtctaac 30470932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 36912442 - 36912377
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    ||||||||||||||||||| ||| |||||||||||||||||| | || ||||||||||||||||||    
T  36912442 agtgttgggaattgaaaaagtgggtgttgaatggtgttgaatatgttgaaccattggggatggtct 36912377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 18029545 - 18029612
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||| || ||||||||| ||||||||||    
T  18029545 agtgttgggaattgaaaaagtgggtgtcgaatggtgttgaatgtgttgaaccattggagatggtctaa 18029612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 26632200 - 26632264
Alignment:
Q  19 gtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    |||||||||||||||||| ||| |||||||||||||||||||   |||||||||| |||||||||    
T  26632200 gtgttgggaattgaaaaagtgggtgttgaatggtgttgaatggtgtaaaccattgaggatggtct 26632264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 41477208 - 41477168
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  41477208 agtgttgggaattgaaaaagtggatgttgaatggtgttgaa 41477168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 8610027 - 8610068
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaat 59  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  8610027 agtgttgggaattgaaaaagtgaatgttgaatggtgttgaat 8610068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 34955712 - 34955776
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |    |||||||||||||||||||    
T  34955712 agtgttgggaattgaaaaagtgg-tgttgaatggtgttgaaagaaaaaaaccattggggatggtct 34955776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 38584940 - 38584982
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatg 60  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  38584940 agtgttgggaattgaaaaagtgtgtgttgaatggtgttgaatg 38584982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4625540 - 4625580
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  4625540 agtgttgggaattgaaaaagtgagtgttgaatggtgttgaa 4625580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 35931887 - 35931815
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaaccaac 90  Q
    |||||||| |||||||||| ||||||||||| | |||||||| | ||  |||||||   ||||||||||||||    
T  35931887 agtgttggaaattgaaaaagtggatgttgaaggttgttgaatttgttttaccattgtaaatggtctaaccaac 35931815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 40283500 - 40283460
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||||||||||| ||| |||||    
T  40283500 agtgttgggaattgaaaaagtggatgttgaaaggtattgaa 40283460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 43524437 - 43524477
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||||||||||| ||| |||||    
T  43524437 agtgttgggaattgaaaaagtggatgttgaagggtattgaa 43524477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 83 - 408
Target Start/End: Original strand, 275176 - 275486
Alignment:
Q  83 taaccaacctggagctgcagatgcagcaggacctacaccacctggtagcgagtctggcccctcagaagaagtcagaatcatcatcaggcaagggagtaga 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||           ||||||||||||||||||| |||    
T  275176 taaccaacccggagctgcagatgcagcaggacctacaccacctggtagcgagtctggccccacagac----------tcatcatcaggcaagggagcaga 275265  T
Q  183 tggggatgtgattgatgctgattttactgaatctaaatgagttatagagattatttaataggattgtttttattttatgctacttccgtactaaattggt 282  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| | |||| ||||||| |||||| |||    
T  275266 tggagatgtgattgatgctgattttactgactctaaatgagttatagagattatttagtaggattg-ttttattatgtgcttcttccgtgctaaatgggt 275364  T
Q  283 agtgatttttgtcaatggagagcgagggttttattataa-atagacnnnnnnnataggtggtgtggtcattgactcacgtttctgtatctttggaaattt 381  Q
    |||||||||||||||||||||||||||||||||||||||  |||||       ||||     ||| |||||||| |||||||||||||||||||||||||    
T  275365 agtgatttttgtcaatggagagcgagggttttattataatttagacttttcttatag-----gtgctcattgacgcacgtttctgtatctttggaaattt 275459  T
Q  382 tgtatgtgaaatacaagtattattgtg 408  Q
    ||| ||||||||||| |||||||||||    
T  275460 tgtctgtgaaatacaggtattattgtg 275486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 37245528 - 37245461
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| | || ||||||||||||||||||||    
T  37245528 agtgttgggaattgaaaaagtgggtgttgaatggtgttaaatatgttgaaccattggggatggtctaa 37245461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 544
Target Start/End: Original strand, 275567 - 275654
Alignment:
Q  454 atgattgtttgcatgttaaacaatgtaatgatgcaactttgtataaacgatagtgtcacaatcggctagattgtacgacggtgtatgtgac 544  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||||  |||||  |||||||||||||  ||| |||||| |||||    
T  275567 atgattgtttgcatgttaaaca--gaaatgatgcaactttgtataaacgat-ttgtcatgatcggctagattgggcgatggtgtaggtgac 275654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 17929302 - 17929342
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  17929302 agtgttgggaattgaaaaaatggatgttgaagggtattgaa 17929342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 14152114 - 14152169
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattg 73  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||  || ||||||||    
T  14152114 agtgttgggaattgaaaaagtgggtgttgaatgttgttgaatggttttaaccattg 14152169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 13151531 - 13151573
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatg 60  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||    
T  13151531 agtgttgggaattgaaaaagtgggtgttgaatgttgttgaatg 13151573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 17485844 - 17485804
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||||||||||| ||| |||||    
T  17485844 agtgttgggaattgaaaaagtggatgttgaagggtattgaa 17485804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 41263384 - 41263322
Alignment:
Q  21 gttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||    
T  41263384 gttgggaattgaaaaagtggatgttgaatggtgttgaatgtgttgaaccattggggatggtct 41263322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 8176349 - 8176416
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||| || ||||||||||||||||||||    
T  8176349 agtgttgggaattgaaaaagtgggtgttgaatgatgttgaatgtgttgaaccattggggatggtctaa 8176416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 41153052 - 41153119
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    ||||||| ||||||||||||||||||||||||  |||||||||| || ||  ||||||||||||||||    
T  41153052 agtgttgagaattgaaaaaatggatgttgaatattgttgaatgtgtttaagaattggggatggtctaa 41153119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 37882475 - 37882540
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    ||||||||||||||||||||||| ||||||| | |||||||||| ||  |||||||  ||||||||    
T  37882475 agtgttgggaattgaaaaaatgggtgttgaacgttgttgaatgtttttcaccattgtagatggtct 37882540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 14278854 - 14278811
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgt 61  Q
    ||||||||||||||||||||||| |||||| || ||||||||||    
T  14278854 agtgttgggaattgaaaaaatgggtgttgagtgttgttgaatgt 14278811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 42608099 - 42608157
Alignment:
Q  27 aattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    ||||||||||| |||||||||||| |||||||||| ||  |||||||  ||||||||||    
T  42608099 aattgaaaaaacggatgttgaatgttgttgaatgtttttcaccattgtagatggtctaa 42608157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 39008505 - 39008465
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||||||||||| ||| |||||    
T  39008505 agtgttgggaattgaaaaagtggatgttgaagggtattgaa 39008465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 37888575 - 37888511
Alignment:
Q  21 gttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||| |||||||||||    
T  37888575 gttgggaattgaaaaagtggatgttgaatggtgttgaatgtgtttaaccattgaggatggtctaa 37888511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 22737641 - 22737706
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| | || ||||||||||||||||||    
T  22737641 agtgttgggaattgaaaaagtgggtgttgaatgctgttgaatatgttgaaccattggggatggtct 22737706  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 37887873 - 37887843
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaa 48  Q
    |||||||||||||||||||||||||||||||    
T  37887873 agtgttgggaattgaaaaaatggatgttgaa 37887843  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 22191246 - 22191182
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    |||||||| |||||||||| ||| |||||||||||||||||||    |||||||| ||||||||||    
T  22191246 agtgttggaaattgaaaaagtgg-tgttgaatggtgttgaatggtaaaaaccattagggatggtct 22191182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 25218850 - 25218891
Alignment:
Q  14 atgaagtgttgggaattgaaaaaatggatgttgaatggtgtt 55  Q
    |||||||||||| |||||||||| |||||||| |||||||||    
T  25218850 atgaagtgttggaaattgaaaaagtggatgttaaatggtgtt 25218891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 26812139 - 26812099
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  26812139 agtgttgggaattgaaaaaatgggtgttgaagggtattgaa 26812099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30584 - 30648
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtc 82  Q
    ||||||| ||||||||||| |||||||||||||||||||||||  || |||||||||||||||||    
T  30584 agtgttgagaattgaaaaagtggatgttgaatggtgttgaatgggtttaaccattggggatggtc 30648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 47750275 - 47750337
Alignment:
Q  23 tgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    |||||||||||||| |||||||||||||||||||||||   ||||||||||||||| ||||||    
T  47750275 tgggaattgaaaaagtggatgttgaatggtgttgaatggtataaaccattggggattgtctaa 47750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 35394942 - 35394877
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    |||||||| |||||||||  ||  |||||||||||||||||||| || ||| ||||||||||||||    
T  35394942 agtgttggaaattgaaaaggtgtgtgttgaatggtgttgaatgtgtttaactattggggatggtct 35394877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 34199315 - 34199358
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgt 61  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||    
T  34199315 agtgttgggaattgaaaaagtggatgttgaaggttgttgaatgt 34199358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 13094436 - 13094476
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  13094436 agtgttgggaattgaaaaaatgggtgttgaagggtattgaa 13094476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 25832767 - 25832836
Alignment:
Q  15 tgaagtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtctaa 85  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    ||||||||  |||||||||||    
T  25832767 tgaagtgttgggaattgaaaaagtgg-tgttgaatggtgttgaatggtaaaaaccattaaggatggtctaa 25832836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 41890561 - 41890497
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    ||||||||||||||||||| || ||||||||||||||||||||    ||||||||| |||||||||    
T  41890561 agtgttgggaattgaaaaagtg-atgttgaatggtgttgaatggtgaaaaccattgtggatggtct 41890497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 46572971 - 46573036
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||| ||  |||||||  ||||||||    
T  46572971 agtgttgggaattgaaaaagtgggtgttgaatgttgttgaatgtttttcaccattgtagatggtct 46573036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 35424055 - 35424087
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatg 50  Q
    |||||||||||||||||||||||||||||||||    
T  35424055 agtgttgggaattgaaaaaatggatgttgaatg 35424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 36178747 - 36178791
Alignment:
Q  15 tgaagtgttgggaattgaaaaaatggatgttgaatggtgttgaat 59  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  36178747 tgaagtgttgggaattgaaaaagtgggtgttgaagggtgttgaat 36178791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 42601788 - 42601748
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  42601788 agtgttgggaattgaaaaagtgggtgttgaatggtgttgaa 42601748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 4046007 - 4045966
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaat 59  Q
    ||||||||||||||||||| ||||||||||| | ||||||||    
T  4046007 agtgttgggaattgaaaaagtggatgttgaaggttgttgaat 4045966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 10426477 - 10426518
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaat 59  Q
    ||||||||||||||||||||||| ||||||| | ||||||||    
T  10426477 agtgttgggaattgaaaaaatgggtgttgaaggttgttgaat 10426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 35472672 - 35472713
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaat 59  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||    
T  35472672 agtgttgggaattgaaaaagtggatgttgaagggtattgaat 35472713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 26165600 - 26165640
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||||||||||| ||| |||||    
T  26165600 agtgttgggaattgaaaaagtggatgttgaagggtattgaa 26165640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 31170271 - 31170311
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  31170271 agtgttgggaattgaaaaaatgggtgttgaagggtattgaa 31170311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 44651096 - 44651032
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgtcttaaaccattggggatggtct 83  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |    |||||||||||||||||||    
T  44651096 agtgttgggaattgaaaaagtgg-tgttgaatggtgttgaaagaaaaaaaccattggggatggtct 44651032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 41542353 - 41542313
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  41542353 agtgttgggaattgaaaaagtggatgttgaatgatgttgaa 41542313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3755074 - 3755117
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatgt 61  Q
    ||||||| ||||||||||| |||||| |||||||||||||||||    
T  3755074 agtgttgagaattgaaaaagtggatgctgaatggtgttgaatgt 3755117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 44334312 - 44334270
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaatg 60  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||    
T  44334312 agtgttgagaattgaaaaagtggatgttgaatggtattgaatg 44334270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 8464122 - 8464085
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgtt 55  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  8464122 agtgttgagaattgaaaaagtggatgttgaatggtgtt 8464085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 29523726 - 29523686
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  29523726 agtgttgggaattgaaaaagtgggtgttgaagggtgttgaa 29523686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 124041 - 124001
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggtgttgaa 58  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  124041 agtgttggaaattgaaaaagtggatgttgaatggtgttgaa 124001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 197829 - 197795
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggt 52  Q
    ||||||||||||||||||| |||||||||||||||    
T  197829 agtgttgggaattgaaaaagtggatgttgaatggt 197795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 8669918 - 8669872
Alignment:
Q  15 tgaagtgttgggaattgaaaaaatggatgttgaatggtgttgaatgt 61  Q
    ||||||||||| |||||||||| ||||||||||| | ||||||||||    
T  8669918 tgaagtgttggaaattgaaaaagtggatgttgaaggttgttgaatgt 8669872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 29428564 - 29428598
Alignment:
Q  18 agtgttgggaattgaaaaaatggatgttgaatggt 52  Q
    ||||||||||||||||||| |||||||||||||||    
T  29428564 agtgttgggaattgaaaaagtggatgttgaatggt 29428598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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